PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004609
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 1031aa    MW: 112477 Da    PI: 7.6917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004609genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.1e-12946994155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GV++ + +gr++A I +      r+r +lg+f t+eeAa a++  +++l+g
  DCAR_004609 946 KKYRGVTRQP-SGRFAAAITEN-----RTRMQLGTFETEEEAALAYDSSALRLHG 994
                  59********.7******9993.....6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5104438.566300377IPR004181Zinc finger, MIZ-type
PfamPF028915.9E-20311359IPR004181Zinc finger, MIZ-type
Gene3DG3DSA:3.30.40.107.1E-4312371IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd000181.89E-229461002No hitNo description
PfamPF008476.3E-8947994IPR001471AP2/ERF domain
PROSITE profilePS5103218.5189471002IPR001471AP2/ERF domain
SMARTSM003807.5E-249471008IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-169471003IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-199471003IPR001471AP2/ERF domain
PRINTSPR003674.1E-7948959IPR001471AP2/ERF domain
PRINTSPR003674.1E-79841004IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0016925Biological Processprotein sumoylation
GO:0051176Biological Processpositive regulation of sulfur metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MSKNAAINPS MLGDIATGTK YSASEVNSYR IMAVADRLAA HICSKDKTDS VEFFNLCLSL  60
ARGIDYAIAN SEVPSFGREL PALLKQVCTR RNDFLLQAAI MVLMISVKTA CENGWFSGAD  120
SEELKFLAYE IGSTFCSAKD INREASSLIP TITTITSRFY PHMKIDQLLA FLTAKPGFEA  180
YVLDFQIRKK LNSSPDDKIW LFVAQIDHVE TSACIISPQQ VNFLLNGKGV ERRTNIFMDN  240
GPQLPTNVTK LLKYGTNLLQ AVGQFNGNYV IIVAYMSFVA KPVRPSLQDY VQPTIALLDS  300
DSELIEEASR ISLSCPISMK RIKTPVKGQS CKHHQCFDLD NYVDINSRRP SWRCPHCNQS  360
VCFNDIRIDQ KMVKAKEVGE NVAVVMISAD GSWKAATESS DQRDQKTSIN VPEVLSQEEP  420
NCTANAVPDI MDLSDGEDAM DTVGASGNEC LKPLLATYEN QLRYLCTTNT GGDNQNRTSH  480
AENTQANGIT GSAPTNYMLS PVLTDAVSPA LNREPEGIPA STLATSVSPS HNAAPFNTQL  540
QHADMTNEYG RYPPTSQTLN RVPVAVQALP AQASTSVSQQ RPMSTSQMSP KPVMVNGSGF  600
SSNVEGQQQP RPLQGSYMSS STLQQQIGSW GPQGHLFSPS RPSQQMSTPL APGGYRVPFS  660
NGQNSHQQHF TGQRMPHIRS QSPGLARTPP HLPPTQTHHG GMPNRASSPY VRQQEQFHSF  720
SQRTSHLPRT PSLFNPVQLQ TTPMPRNVDA HRPSISNTGG NLQPVGTPEG TVNTSTEQDW  780
RPTGRMRGSL SGRAYSEALN QYIIQPTQPV QPIRPPTNTV TSPSGIPSPH VPRADNMNMN  840
ATQGANVSSV QPASTAGMSN VGNNQTLAHP DNPTSQYTHD GNGGEARKED NAPDQLTDDG  900
ERVKSSEEKE NCSGRKYIGE KRQHSENFTA STTEQGTNGG EHCNGKKYRG VTRQPSGRFA  960
AAITENRTRM QLGTFETEEE AALAYDSSAL RLHGSSAVLN FPRRSSGDQK TGLSGIELWK  1020
KATSYLNSQK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-159451008370ATERF1
3gcc_A2e-159451008370ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230627.10.0PREDICTED: E4 SUMO-protein ligase PIAL2-like
TrEMBLA0A162BAF10.0A0A162BAF1_DAUCS; Uncharacterized protein
STRINGVIT_02s0025g00470.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-16ethylene responsive element binding factor 2