PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004591
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 543aa    MW: 59915 Da    PI: 6.8147
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004591genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.69.8e-15741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  DCAR_004591  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                 99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-8155IPR000679Zinc finger, GATA-type
CDDcd002028.42E-16654No hitNo description
SuperFamilySSF577163.94E-10644No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.8E-12741IPR000679Zinc finger, GATA-type
PfamPF139192.5E-7291379IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MVKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLSNYTPLHS RGEPDELEYR  60
VRMKAMSLKH KEAKVLKRKQ NHGVDVVSRV APDTASQKGV RDALHYNQGY LKTLDEDTSN  120
RSSSGSAISP SGSCVHLGSA DASDLTGATQ SIVWDSTVPS RKRTCVGRAK PSSVEKLTKD  180
LYTILQEQQS YFSGSTEEDV LLECDTPVVS VEIGHGSVLI RHPNSVARDE ESEASSFSVY  240
NKPHPANEAC SEFITLRNHT LNRFNNFSSA EIEGKKQPGH EKEHELYKRK DQQENLETVG  300
NHKSPIFSIE LNDVLNYEEF RRHITNHELQ ELLNLLPSTD ILGLPDSLKL MFESPQFKEN  360
VSAFQKLIAD GVFDLSSAEV NNECNSTLTR LLLHTLTKSC WVEQYNILKD TNCGSTVGGS  420
SDAREHAAVA SAQSLEIKRS RVGQPQNIPG GKKAVKTNYG LKAPMDKEAT FFSPKTRLVQ  480
PPDNTSLMPD CFQFGDESSD HDLLLNIPSH SSFPQAELLL PTQGFGAQAS TSSSIYHNHV  540
LH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228375.10.0PREDICTED: GATA transcription factor 26-like isoform X2
TrEMBLA0A166J9M40.0A0A166J9M4_DAUCS; Uncharacterized protein
STRINGcassava4.1_005076m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-113GATA transcription factor 26