PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004471
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 237aa    MW: 25806.7 Da    PI: 4.858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004471genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-1853103155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  DCAR_004471  53 PVYHGVRMRN-WGKWVSEIREPRK---KNRIWLGTFATPEMAARAHDVAALSIKG 103
                  68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1253103IPR001471AP2/ERF domain
SMARTSM003803.0E-3254117IPR001471AP2/ERF domain
PROSITE profilePS5103222.19454111IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2154112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3154112IPR001471AP2/ERF domain
PRINTSPR003673.5E-95566IPR001471AP2/ERF domain
CDDcd000182.26E-2955113No hitNo description
PRINTSPR003673.5E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTASSELESS SNSFSCSPSS PASPELVKSK NDSEKALEPN RKPKRMRENS KHPVYHGVRM  60
RNWGKWVSEI REPRKKNRIW LGTFATPEMA ARAHDVAALS IKGNSAILNF PDLADSFPRP  120
ASNSPRDVQA AATKAAAMEK FDTTLPSPSS SSSSSLTSSS SLSSLVSSID LSTSDELTEI  180
VELPSLGTCF DSAELKNDFV LIDSVDGWFY PPLWPLENAY DGDVAADTGE FRFEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1849111972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237640.11e-170PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-71DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A166J5J21e-169A0A166J5J2_DAUCS; Uncharacterized protein
STRINGXP_002516502.12e-76(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]