PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 34382.7 Da PI: 4.6068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.8e-10 | 41 | 79 | 4 | 46 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 GVr + r rWvAeI +p++ k+ r ++g+f t eeA ka+ DCAR_004450 41 EGVRMK--RSRWVAEIEHPKK--KNVRMWIGSFATQEEASKAY 79 699864..57********965..35*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.22 | 39 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-4 | 39 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-12 | 41 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-8 | 42 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-5 | 42 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAKKNCRKSV TKNLATSYFT VRKTRRHAVC LSEKQVPMKL EGVRMKRSRW VAEIEHPKKK 60 NVRMWIGSFA TQEEASKAYQ MRKMELEEIK FKDAVKKDKF VGDQEVEAFC DDGDDGVVVC 120 DDQVMKGVDF DGEKNGVTIE GVRICLGSYT AQEEASKAYQ SEKMEHEKLK LRAIARKDNL 180 GDDQEVVSGH EESNAESLPD NSDVVVKLAD FDDQVATLVG FDDANIVESR GESQSDDCDV 240 SVNVIGSDDQ AMEVIHIDYQ AERSLSRRIV EQEAVDMLLQ SGPILMDRYG CLLGEFSWMD 300 DLSIV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A166J4Y5 | 0.0 | A0A166J4Y5_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 8e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004450 |