PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004389

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 415aa MW: 46959.9 Da PI: 6.6079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004389	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.3	2.6e-07	321	368	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++++++d + y +lp+ +AAk+ +++ +LK C + WP+ kik+ DCAR_004389 321 SQLEMKDFADYLHLPMYAAAKKYDISSRALKNLCDRKSFT-WPYEKIKK 368 7899****************************999976.****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.66	302	389	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MADPNTHVPD HHDPEHNSDE SLGFDFQFSP PSGENIMLDE DVTKLVQERR KKMLNEDVIQ 60 IGLDTSQTGP SGGLNGQSNE DLSGNLNRDF SNFGNPTPLA QWPVPEQPYS CSCCQVLREI 120 IHTIDGESRK FEIHGRVGEI FHGILEICRR DVHPPYKVYQ MFDFCKETIL DIKAFLVQYC 180 EDRTDAGYTM VKDPLLEFNE ALNIGSDWDY DPNADEFSLG SLMDIDDNTG QPPEEPDDSQ 240 PQARRNEKGS KGKGKLVVTE KGSKGKGKLV ANEKGSKGSK GKGKLVVNEA SKKVSKRTKN 300 KAKSIYKEGR RIYKEQRVFT SQLEMKDFAD YLHLPMYAAA KKYDISSRAL KNLCDRKSFT 360 WPYEKIKKCE RQIKRNRAVL NSSVDAKEKR RVEAEIIELE QEIASLLAPT FKDK*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MADPNTHVPD HHDPEHNSDE SLGFDFQFSP PSGENIMLDE DVTKLVQERR KKMLNEDVIQ  60
IGLDTSQTGP SGGLNGQSNE DLSGNLNRDF SNFGNPTPLA QWPVPEQPYS CSCCQVLREI  120
IHTIDGESRK FEIHGRVGEI FHGILEICRR DVHPPYKVYQ MFDFCKETIL DIKAFLVQYC  180
EDRTDAGYTM VKDPLLEFNE ALNIGSDWDY DPNADEFSLG SLMDIDDNTG QPPEEPDDSQ  240
PQARRNEKGS KGKGKLVVTE KGSKGKGKLV ANEKGSKGSK GKGKLVVNEA SKKVSKRTKN  300
KAKSIYKEGR RIYKEQRVFT SQLEMKDFAD YLHLPMYAAA KKYDISSRAL KNLCDRKSFT  360
WPYEKIKKCE RQIKRNRAVL NSSVDAKEKR RVEAEIIELE QEIASLLAPT FKDK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254850.1	3e-67	PREDICTED: uncharacterized protein LOC108224673
TrEMBL	A0A162B9P9	0.0	A0A162B9P9_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Link Out ? help Back to Top
Phytozome	DCAR_004389