PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004344
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 673aa    MW: 75553.5 Da    PI: 4.6105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004344genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07553587137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      rg+WT+++ el+++a +q+G++  + I + ++ gRt 
      DCAR_004344 553 RGKWTKQDTELFYQALQQFGTD-LTMITQLFP-GRTH 587
                      89********************.*********.**95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.6E-13547588No hitNo description
SuperFamilySSF466893.51E-7550588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-4550587IPR009057Homeodomain-like
CDDcd001670.00711555586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDLEIDLLDD ILADNATKNA RPSGKFRPKA KPKPRKESFA PSQSAQPVII SEHESKNASE  60
NTLDDTIIIP PLDDNKNSKS TSLPTEHLPD KENDGSTGGS HLDALLSGIT GDYNSSFGNE  120
GDTGSLMENS DAFLSQATTV TETETTYVDS SRNEEVILDS ARDTSVHHGM QRFNTSSFCL  180
DYELPASLDT FHEEFTSNTD GYFQVGNTSP FLETQNITTE FTSRTGRHTE KLQPKPKLQN  240
QEETHCSTVH NPDNVPPVPS QTDNFDEGSI PAVPLDDMID FSSMEFDDSV PTDPAPEISG  300
FVVTSHTEEQ NIVPDPSDKE RGRTDTGLEH SVEHLILSTS GLEEKHGRSS KRLKKKKHVH  360
QLVDEPEEHD LETGQLTAEY PKGSAVTEDD HTDKDYLLED DRPNKKVRGK SKKLVAEKEK  420
TVRKRKKANE ASKQPTKTSK KKFSHSTRRR GRFDKDWLKT PEDELEISDL PLKDIILLGE  480
YREWMAKKNP ETSQTPPVTN HSAAKSPARY YDEDDDRFAS EHEQEFNDEH ENVAVQDNGT  540
YFNYQSHMKK TPRGKWTKQD TELFYQALQQ FGTDLTMITQ LFPGRTHHSH FQLIIDQVKK  600
AVAERKQISE TDDLDILPEE QPEGLPPEVN EGTKSAEVEG PVEDEGPAAT GPVESSDSDD  660
DEKRWSQFRS DL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419425KTVRKRK
2422426RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1484431e-104FJ148443.1 Daucus carota subsp. sativus clone BAC C053I18 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230332.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
RefseqXP_017230333.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
RefseqXP_017230335.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
RefseqXP_017230336.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBLA0A166J0J20.0A0A166J0J2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-24MYB_related family protein