PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004273

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 407aa MW: 45045.2 Da PI: 6.6106

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004273	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.5	9.3e-16	238	267	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ DCAR_004273 238 GATPKSVLELMDVKDLTLAHVKSHLQMYRT 267 69***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-14	235	267	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-5	238	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-11	238	267	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MELFPAQPDL SLQISLPNSS KGASGGGGGW RRTRTEEDKD GMDLGFWKRA LDNSKNSSSS 60 PIFNSSVFSK PSDTNNTAAN SCFDLSLSNP SSASYQKPVN NNIISTQQNF HNLLQNNNNH 120 LLHYTNFNQH NYQQGHQNNI LHNNHHHLYN QNHQYQGGRG LSSDELMGYL KPIRGIPVYQ 180 QQNPPTATTT PYLNFPFVQQ PCSLDSTSSL SSTSPTTPNP SHDSFQSQFD FSFVGLIGAT 240 PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRAAASSDL FENGSSGDTS EDLMFDNNIQ 300 NPRRSHDDDS SQQGKSKAPH LDKDYQGLWT NSSSSREAWL HGKQIDCGDN NIPSQDQKDM 360 DGKSLSSYER ISEAMSSSNA AETNSTLLFC PKKKPNLEFT LGRPLC*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MELFPAQPDL SLQISLPNSS KGASGGGGGW RRTRTEEDKD GMDLGFWKRA LDNSKNSSSS  60
PIFNSSVFSK PSDTNNTAAN SCFDLSLSNP SSASYQKPVN NNIISTQQNF HNLLQNNNNH  120
LLHYTNFNQH NYQQGHQNNI LHNNHHHLYN QNHQYQGGRG LSSDELMGYL KPIRGIPVYQ  180
QQNPPTATTT PYLNFPFVQQ PCSLDSTSSL SSTSPTTPNP SHDSFQSQFD FSFVGLIGAT  240
PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRAAASSDL FENGSSGDTS EDLMFDNNIQ  300
NPRRSHDDDS SQQGKSKAPH LDKDYQGLWT NSSSSREAWL HGKQIDCGDN NIPSQDQKDM  360
DGKSLSSYER ISEAMSSSNA AETNSTLLFC PKKKPNLEFT LGRPLC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254399.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X1
TrEMBL	A0A166IY62	0.0	A0A166IY62_DAUCS; Uncharacterized protein
STRING	VIT_02s0012g01940.t01	4e-84	(Vitis vinifera)
STRING	POPTR_0001s02010.1	6e-84	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_004273