PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 205aa MW: 22709.5 Da PI: 7.1278 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.1 | 2.9e-31 | 24 | 77 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW++eLH++Fv ave+LGG+++AtPk il+lm+vkg+t++hvkSHLQ+YR+ DCAR_004231 24 PRLRWSEELHKSFVLAVERLGGEDRATPKMILQLMDVKGVTISHVKSHLQMYRS 77 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-30 | 20 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-6 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MMSSSQNYIV SATRIRPYVR SKNPRLRWSE ELHKSFVLAV ERLGGEDRAT PKMILQLMDV 60 KGVTISHVKS HLQMYRSMKH EQMIHAAEVE ARRQAAPGTN YFNYSDASDK KVANSMAENF 120 LTPPAWINMY EANWNESCAS EPAFHFNGES VRGFCGNGKE KMLLDTVAGD GGCSASSSNS 180 RGSDMSVTTR DADDISLELT LGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-18 | 25 | 80 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-18 | 25 | 80 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-18 | 25 | 80 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-18 | 25 | 80 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 25 | 80 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017223744.1 | 1e-154 | PREDICTED: transcription repressor KAN1-like | ||||
Refseq | XP_017223754.1 | 1e-154 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A166IWV0 | 1e-152 | A0A166IWV0_DAUCS; Uncharacterized protein | ||||
STRING | XP_009803423.1 | 1e-43 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004231 |