PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004202
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 770aa    MW: 84814.2 Da    PI: 5.93
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004202genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1967122156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  DCAR_004202  67 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 122
                  688999***********************************************998 PP

2START193.11.4e-602585091206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++el+++a+a+ep+W  s     e + +de+l++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+t++v+
  DCAR_004202 258 ELAVAAMEELIRMAQAGEPLWIPSTdigiECLSEDEYLRNFPRGIGpkpmgLKSEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRAMTIDVL 354
                  57899********************999999************999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE............... CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh............... 161
                  s+g      galq+m+ae+q++splvp R+ +fvRy++q+  g w+++dvS+d+ ++ +    + R++++pSg+li++++ng+               
  DCAR_004202 355 STGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHDNGIWAVADVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYskvqlsllliffshd 448
                  ********************************************************965....8********************************** PP

                  ................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 162 ................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                   +vtwvehv++++r +h ++rslv+sgla+gak+wv tl+rqce+
  DCAR_004202 449 phnglsffilflqevlFQVTWVEHVEVDDRAVHDIYRSLVNSGLAFGAKRWVTTLDRQCER 509
                  ***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2249122IPR009057Homeodomain-like
SuperFamilySSF466892.17E-1852124IPR009057Homeodomain-like
PROSITE profilePS5007116.29364124IPR001356Homeobox domain
SMARTSM003898.4E-1765128IPR001356Homeobox domain
PfamPF000461.2E-1667122IPR001356Homeobox domain
CDDcd000863.27E-1767125No hitNo description
PROSITE profilePS5084843.201249512IPR002913START domain
SuperFamilySSF559619.75E-33251432No hitNo description
CDDcd088757.05E-124253508No hitNo description
SMARTSM002346.6E-61258509IPR002913START domain
PfamPF018523.4E-49259509IPR002913START domain
Gene3DG3DSA:3.30.530.204.7E-4355508IPR023393START-like domain
SuperFamilySSF559619.75E-33464511No hitNo description
SuperFamilySSF559614.18E-27528760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MFQPNMFESH HHLLDHMSHH HKTPEDSDHQ LDMLRDEEFE SKSGGTDILE NPSGDDEQDP  60
NQRPNKKKRY HRHTQHQIQE MESFFKECPH PDDKQRKELG RRLSLEPLQV KFWFQNKRTQ  120
MKAQHERHEN TQLRNENEKL RADNVRYKEA LTNATCPNCG GPAAIGEMSF DEQHLRIENA  180
RLREEIDKIS GIAAKYVGKP MQTMLSSSFP HAPSRSLDLG VGSFGPQSGI SVPDMFGAGD  240
LLRSVAGPSE ADKPLIIELA VAAMEELIRM AQAGEPLWIP STDIGIECLS EDEYLRNFPR  300
GIGPKPMGLK SEASRESAVV IMNHINLVEI LMDVNQWSTV FSGIVSRAMT IDVLSTGVAG  360
NYNGALQVMT AEFQVPSPLV PTRENYFVRY CKQHDNGIWA VADVSLDNLR PSSISRCRRR  420
PSGCLIQELP NGYSKVQLSL LLIFFSHDPH NGLSFFILFL QEVLFQVTWV EHVEVDDRAV  480
HDIYRSLVNS GLAFGAKRWV TTLDRQCERL ASAMANNIPA GDVGVITTPE GRKSMLKLAE  540
RMVLSFCTGV GASTAHTWTT LSGSGADDVR VMTRKSIDDP GRPPGIVLSA ATSFWLPVPP  600
KRVFDFLRDE NSRSEWDILS NGGLVQEMAH IANGRDPGNC VSLLRVNSAN SSQSNMLILQ  660
ESCADSTGSY VIYAPVDIVA MNVVLSGGDP DYVALLPSGF AILPDGPGQN VGGILEVGSG  720
GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIKCTVERIK SAVVCDPNV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230122.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_017230124.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_017230125.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A166IVU00.0A0A166IVU0_DAUCS; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRĂ–SCHEN and DORNRĂ–SCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]