PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 770aa MW: 84814.2 Da PI: 5.93 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 67 | 122 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+ qVk+WFqN+R+++k DCAR_004202 67 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 122 688999***********************************************998 PP | |||||||
2 | START | 193.1 | 1.4e-60 | 258 | 509 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela +a++el+++a+a+ep+W s e + +de+l++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+t++v+ DCAR_004202 258 ELAVAAMEELIRMAQAGEPLWIPSTdigiECLSEDEYLRNFPRGIGpkpmgLKSEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRAMTIDVL 354 57899********************999999************999********************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE............... CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh............... 161 s+g galq+m+ae+q++splvp R+ +fvRy++q+ g w+++dvS+d+ ++ + + R++++pSg+li++++ng+ DCAR_004202 355 STGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHDNGIWAVADVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYskvqlsllliffshd 448 ********************************************************965....8********************************** PP ................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 ................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwvehv++++r +h ++rslv+sgla+gak+wv tl+rqce+ DCAR_004202 449 phnglsffilflqevlFQVTWVEHVEVDDRAVHDIYRSLVNSGLAFGAKRWVTTLDRQCER 509 ***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 49 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.17E-18 | 52 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-17 | 65 | 128 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 67 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.27E-17 | 67 | 125 | No hit | No description |
PROSITE profile | PS50848 | 43.201 | 249 | 512 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.75E-33 | 251 | 432 | No hit | No description |
CDD | cd08875 | 7.05E-124 | 253 | 508 | No hit | No description |
SMART | SM00234 | 6.6E-61 | 258 | 509 | IPR002913 | START domain |
Pfam | PF01852 | 3.4E-49 | 259 | 509 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.7E-4 | 355 | 508 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.75E-33 | 464 | 511 | No hit | No description |
SuperFamily | SSF55961 | 4.18E-27 | 528 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MFQPNMFESH HHLLDHMSHH HKTPEDSDHQ LDMLRDEEFE SKSGGTDILE NPSGDDEQDP 60 NQRPNKKKRY HRHTQHQIQE MESFFKECPH PDDKQRKELG RRLSLEPLQV KFWFQNKRTQ 120 MKAQHERHEN TQLRNENEKL RADNVRYKEA LTNATCPNCG GPAAIGEMSF DEQHLRIENA 180 RLREEIDKIS GIAAKYVGKP MQTMLSSSFP HAPSRSLDLG VGSFGPQSGI SVPDMFGAGD 240 LLRSVAGPSE ADKPLIIELA VAAMEELIRM AQAGEPLWIP STDIGIECLS EDEYLRNFPR 300 GIGPKPMGLK SEASRESAVV IMNHINLVEI LMDVNQWSTV FSGIVSRAMT IDVLSTGVAG 360 NYNGALQVMT AEFQVPSPLV PTRENYFVRY CKQHDNGIWA VADVSLDNLR PSSISRCRRR 420 PSGCLIQELP NGYSKVQLSL LLIFFSHDPH NGLSFFILFL QEVLFQVTWV EHVEVDDRAV 480 HDIYRSLVNS GLAFGAKRWV TTLDRQCERL ASAMANNIPA GDVGVITTPE GRKSMLKLAE 540 RMVLSFCTGV GASTAHTWTT LSGSGADDVR VMTRKSIDDP GRPPGIVLSA ATSFWLPVPP 600 KRVFDFLRDE NSRSEWDILS NGGLVQEMAH IANGRDPGNC VSLLRVNSAN SSQSNMLILQ 660 ESCADSTGSY VIYAPVDIVA MNVVLSGGDP DYVALLPSGF AILPDGPGQN VGGILEVGSG 720 GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIKCTVERIK SAVVCDPNV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017230122.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_017230124.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_017230125.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A166IVU0 | 0.0 | A0A166IVU0_DAUCS; Uncharacterized protein | ||||
STRING | Migut.M01293.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004202 |