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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_004170 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
BBR-BPC |
Protein Properties |
Length: 287aa MW: 31690.3 Da PI: 10.2814 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_004170 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 334.4 | 3.1e-102 | 1 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia..erdaki..rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mdddg + rn+gyyep+ +ke+lglqlms i rd+k+ +r+ + + ++a+++r+ m++++rd++++ ++l+++l
DCAR_004170 1 MDDDGLNMRNWGYYEPS--FKEHLGLQLMSPIGgdHRDTKPflSSRDPVMLNANGAYHPRNcvvseapvpMNYMMRDSWIQR---------DRLMHVL 87
9*****99*******99..*************8878****9998899999******************************99.........8899999 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ + s +v ++++s +++q ++++ ++++ ++ ++ + + ++kkrq + +pk+++ kk+kk +++s+++ k+++
DCAR_004170 88 PGNSS--------FGVNPEAHSSHTMQI-------MQPMDSLSKDQVLTEDVKPDIRKGGSSGHTKKRQGPVTPKAPRVKKPKKGPAVSNDNRKSST- 169
95554........677788888888887.......23444444455666777778888999999999*****************8888877776666. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
+r ka kks+++v+ng+++D+s++P+PvCsCtG+++qCYkWG+GGWqSaCCtttiS+yPLP+stkrrg+RiagrKmSqgafkk+LekLa+eGy+++n
DCAR_004170 170 -QRPKAVKKSVEVVINGIDMDISGIPTPVCSCTGTPQQCYKWGCGGWQSACCTTTISTYPLPMSTKRRGSRIAGRKMSQGAFKKVLEKLASEGYNFGN 266
.79*********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
++DLk+hWAkHGtnkfvtir
DCAR_004170 267 AIDLKSHWAKHGTNKFVTIR 286
*******************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSFKE HLGLQLMSPI GGDHRDTKPF LSSRDPVMLN ANGAYHPRNC 60 VVSEAPVPMN YMMRDSWIQR DRLMHVLPGN SSFGVNPEAH SSHTMQIMQP MDSLSKDQVL 120 TEDVKPDIRK GGSSGHTKKR QGPVTPKAPR VKKPKKGPAV SNDNRKSSTQ RPKAVKKSVE 180 VVINGIDMDI SGIPTPVCSC TGTPQQCYKW GCGGWQSACC TTTISTYPLP MSTKRRGSRI 240 AGRKMSQGAF KKVLEKLASE GYNFGNAIDL KSHWAKHGTN KFVTIR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |