PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23312 Da PI: 9.2368 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+tae Aa+a++aa++ +++ DCAR_004053 21 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEAAARAYDAAARGFRN 70 6********.**********8...557**********************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-21 | 21 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-13 | 21 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.88E-18 | 21 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-31 | 21 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-34 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAPKEKTAPP CKKQTNVDEV HYRGVRKRPW GRYAAEIRDP GKKTRVWLGT FDTAEAAARA 60 YDAAARGFRN NKAKTNFPTP DEIMNVSDFK KIDTSKKVGN EYDVKQSQSP TSTLESSSQE 120 RFLSLDLNVA ADGFGSGYGS GFGSPILYPF QIQPVQIFGF VPAAGYRSSD GSGFRVSSGS 180 QSDSDSSSVV DVNMNRRGIM IDLNELPLPE YF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 21 | 78 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232556.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 4e-37 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A166IR48 | 1e-155 | A0A166IR48_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-28 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004053 |