PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004044

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HB-other

Protein Properties

Length: 1718aa MW: 193117 Da PI: 5.4172

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004044	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	22	77	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+ ++ ++yps++ r+eL+ +lgLt+rq ++WF+ rR k+kk DCAR_004044 22 PKRQMKTPFQLETLERTYAAEMYPSEAIRAELSVRLGLTDRQLQMWFCHRRLKDKK 77 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-17	4	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-16	12	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.823	18	78	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	20	82	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	22	77	IPR001356	Homeobox domain
CDD	cd00086	5.80E-14	23	78	No hit	No description
PROSITE profile	PS50827	12.202	510	592	IPR018501	DDT domain
SMART	SM00571	4.1E-12	510	592	IPR018501	DDT domain
Pfam	PF02791	5.0E-14	512	589	IPR018501	DDT domain
Pfam	PF05066	2.0E-11	714	781	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15613	2.6E-13	1086	1157	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1718 aa Download sequence Send to blast
MDSGSDGESN KNSGQVEGFK KPKRQMKTPF QLETLERTYA AEMYPSEAIR AELSVRLGLT 60 DRQLQMWFCH RRLKDKKEGS GSGKKTPAAA VGNKGMISSS RDIVKMEEQG SDGGFGSMSR 120 SRSGSGSGPG SGPGSDSSQY DDDLPLVRRS YVMSPQEAMM QRVIACVEGQ LGEPLREDGP 180 VLGMEFDEVP PGAFGEPISA AAVITEPWGR SGNFYEGKMV ERSKPKKIKA ADRSFSEPAE 240 PSSRPDSYGR SPSHFYILPA DVSNVKRSPL MQGSGQLSRE YGAQVPSSSY SSLNHKVVQE 300 QFSSPPNNNE SILKTEDVYQ IGQKRKSDEV RTGKDVAHEK RIRKELEKQD LLRRKREELM 360 RKEMERQERE RKKEEERMMR EKMRMEEKYQ REEKREIERR EKFLQRELLK AERMRQKEEL 420 RREREAAKQK AAMEKAALRR VAKESLELIE DERLELMELA ASSKGLPSII SLDYDTLQNL 480 ESFRDSLCAF PPKDVQLKKP FSIQPWIDSE DNIGNLLMVW RFCVTFSDVL GLWPFTLDEF 540 IQALHDYLNV FLVHFLNLTS QHVFSASLHQ DSRLLAEIHI ALLNLIIKDI EEGARTPSGG 600 AGTNQYTVAN PEGGHPHIVE GAFLWGFDIR SWQKHLNPLT WPEILRQFAL SAGFGPQLRK 660 ESTEPKHMHD NEVKSCEDIV SMLRNGSAVE NAVAVMQEKG SSLQRRSRHR LTPGTVKFAA 720 YHVLCLEGGK GQTVLELAEK IQKSGLRDLS TSKTPDASIS VALSRDPVLF ERIAPSTYCV 780 RPAFRKDPAN AEEILAEARE KIQKFSNGLL AEETADDVEK DDDSESDVAE GPEFDELSTL 840 SNVNKDGGLY EVGSLSGNAV DISCNAVSSD LQNDLDVPGN PMDKIYNSGK DVASSDPAQG 900 VAEIDESKSG EEWVQGLSEG EYCVLCVEDR LSALVAIISV VNEGNIIRAV LEDRLDAANA 960 LRKQMWAEAQ LDKRRLKDEN LSKFHDPCLT DAADGSYSPS GVPENKNIEV ALDTAIKEEP 1020 FVGLDNIRKE HNNLCGTNYE RNLVVENTSM NQNTPTVQHN GSTSERSRLQ LKSFIGHRAE 1080 EMHVYRSLPL GQDRRHNRYW QFVASASRHD PGSGRIFVEL RDGGWRMIDS EEAFNSLLVS 1140 LDTRGIRESH LHIMLQHSQT SFKENLRRNL QLFDIVGNAK NSTENQVTEM DYCSGYLAGH 1200 RSPRSAACDS RTALSESSIS FRIDVGKNEI EKLNAYKRYQ VLKSWVWKEC INSMNLNART 1260 SRRKGYMPLL GICDFCFDTF LFEDNRCPSC QRTFSITGEG LNYSASLIQC EEQWQVNPSK 1320 PIALDSSFPQ IRLIKALLSF IEVSIPPEAF QSSWTCDRRS TWGKKLQNAS SVGDLLQILT 1380 QLEGVIKQDY LSSNYETTAE LLGFCTLSGK AAKESDPELV PQLPWIPQTT AAVALRLLEL 1440 DSSIFYTPLQ KAAETNSVTE AGNFTKLSSR STFLKDVRKA ESTQVPQSGS GKQVIRGRGG 1500 ARPRGKSQKK VPGSRSGSGK QSIKVKKPLT QILMQPGENM LVQRHKHGQV QEQGQNHKRG 1560 PRTVRRRRES RTEDMVLGNF GGHSSFVIKE TPRNFNEREW ISEEMRSMQN EHPDNNTTEE 1620 SESDDNADTT GYREQRWEPK YNVAAHPSTW DPVEMSDEDA YDAVNDFVED DDNMEQDIDM 1680 NYGSVRNNLD DDVDMNDGLV GNNDEESFET SGEDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1718 aa Download sequence Send to blast

MDSGSDGESN KNSGQVEGFK KPKRQMKTPF QLETLERTYA AEMYPSEAIR AELSVRLGLT  60
DRQLQMWFCH RRLKDKKEGS GSGKKTPAAA VGNKGMISSS RDIVKMEEQG SDGGFGSMSR  120
SRSGSGSGPG SGPGSDSSQY DDDLPLVRRS YVMSPQEAMM QRVIACVEGQ LGEPLREDGP  180
VLGMEFDEVP PGAFGEPISA AAVITEPWGR SGNFYEGKMV ERSKPKKIKA ADRSFSEPAE  240
PSSRPDSYGR SPSHFYILPA DVSNVKRSPL MQGSGQLSRE YGAQVPSSSY SSLNHKVVQE  300
QFSSPPNNNE SILKTEDVYQ IGQKRKSDEV RTGKDVAHEK RIRKELEKQD LLRRKREELM  360
RKEMERQERE RKKEEERMMR EKMRMEEKYQ REEKREIERR EKFLQRELLK AERMRQKEEL  420
RREREAAKQK AAMEKAALRR VAKESLELIE DERLELMELA ASSKGLPSII SLDYDTLQNL  480
ESFRDSLCAF PPKDVQLKKP FSIQPWIDSE DNIGNLLMVW RFCVTFSDVL GLWPFTLDEF  540
IQALHDYLNV FLVHFLNLTS QHVFSASLHQ DSRLLAEIHI ALLNLIIKDI EEGARTPSGG  600
AGTNQYTVAN PEGGHPHIVE GAFLWGFDIR SWQKHLNPLT WPEILRQFAL SAGFGPQLRK  660
ESTEPKHMHD NEVKSCEDIV SMLRNGSAVE NAVAVMQEKG SSLQRRSRHR LTPGTVKFAA  720
YHVLCLEGGK GQTVLELAEK IQKSGLRDLS TSKTPDASIS VALSRDPVLF ERIAPSTYCV  780
RPAFRKDPAN AEEILAEARE KIQKFSNGLL AEETADDVEK DDDSESDVAE GPEFDELSTL  840
SNVNKDGGLY EVGSLSGNAV DISCNAVSSD LQNDLDVPGN PMDKIYNSGK DVASSDPAQG  900
VAEIDESKSG EEWVQGLSEG EYCVLCVEDR LSALVAIISV VNEGNIIRAV LEDRLDAANA  960
LRKQMWAEAQ LDKRRLKDEN LSKFHDPCLT DAADGSYSPS GVPENKNIEV ALDTAIKEEP  1020
FVGLDNIRKE HNNLCGTNYE RNLVVENTSM NQNTPTVQHN GSTSERSRLQ LKSFIGHRAE  1080
EMHVYRSLPL GQDRRHNRYW QFVASASRHD PGSGRIFVEL RDGGWRMIDS EEAFNSLLVS  1140
LDTRGIRESH LHIMLQHSQT SFKENLRRNL QLFDIVGNAK NSTENQVTEM DYCSGYLAGH  1200
RSPRSAACDS RTALSESSIS FRIDVGKNEI EKLNAYKRYQ VLKSWVWKEC INSMNLNART  1260
SRRKGYMPLL GICDFCFDTF LFEDNRCPSC QRTFSITGEG LNYSASLIQC EEQWQVNPSK  1320
PIALDSSFPQ IRLIKALLSF IEVSIPPEAF QSSWTCDRRS TWGKKLQNAS SVGDLLQILT  1380
QLEGVIKQDY LSSNYETTAE LLGFCTLSGK AAKESDPELV PQLPWIPQTT AAVALRLLEL  1440
DSSIFYTPLQ KAAETNSVTE AGNFTKLSSR STFLKDVRKA ESTQVPQSGS GKQVIRGRGG  1500
ARPRGKSQKK VPGSRSGSGK QSIKVKKPLT QILMQPGENM LVQRHKHGQV QEQGQNHKRG  1560
PRTVRRRRES RTEDMVLGNF GGHSSFVIKE TPRNFNEREW ISEEMRSMQN EHPDNNTTEE  1620
SESDDNADTT GYREQRWEPK YNVAAHPSTW DPVEMSDEDA YDAVNDFVED DDNMEQDIDM  1680
NYGSVRNNLD DDVDMNDGLV GNNDEESFET SGEDYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	77	RRLKDKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017227637.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A166IQT7	0.0	A0A166IQT7_DAUCS; Uncharacterized protein
STRING	Migut.M01107.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	DCAR_004044