PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004032

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WOX

Protein Properties

Length: 324aa MW: 34830.8 Da PI: 7.3594

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004032	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.7	4.7e-09	3	40	24	57
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ ++l ++ +++V++WFqNr+ + k+ DCAR_004032 3 NPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKN 40 7999*******************************995 PP
2	Wus_type_Homeobox	67.9	1.8e-22	1	42	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k+ DCAR_004032 1 MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKNKK 42 78*************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.34E-5	3	43	IPR009057	Homeodomain-like
CDD	cd00086	0.0092	3	42	No hit	No description
Pfam	PF00046	1.4E-6	3	39	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVNPPRDEIR RIRAQLQEYG QVGDANVFYW FQNRKSRSKN KKNSLQNSTT KSSLSTHPLS 60 PQAIAKPAPL VSNSSSSSSD KSSHKSAERK PFSCNVLDGL NSPTGSVNQP YFSAFLPEPY 120 MFPGSQSSLI SGSSAAGLSL AQGFCFPELV ASNDYVGHNN NSVSQHLGQA FGNCSSTSAS 180 VLLTDLMNLG GVSNYYKRGE DNDKTKMQQL LSYSVTTATP TCAQTILPPA VSPSVMSAIN 240 HIQGEEVRKS TVFINDVAIE VASGPFNVRE AFGDDAVLIH SSGQPVVTNE WGVTLHSLQH 300 GAFYYLLSAS IANSHLHSHE LEI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017218505.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A0A166IQF7	0.0	A0A166IQF7_DAUCS; Uncharacterized protein
STRING	EOY28117	6e-79	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-21	homeobox-3

Link Out ? help Back to Top
Phytozome	DCAR_004032