PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004005
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 337aa    MW: 38048.1 Da    PI: 9.0495
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004005genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.33.5e-1228118186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +Wt++ + +L+++  ++  + +rg+l+  +W +v+ ++     + ++  r+ +qCk++++ ++kr+k++k++        +st++++dql+
  DCAR_004005  28 CWTEEATATLVNVWGRRYLETNRGSLRCEDWNQVALAVnerhgATQKQVRTDVQCKNRIDTIKKRFKAEKARVCASGGAYVSTWRFYDQLD 118
                  8*************************************9766655666799********************99887788899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-2126119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGDFSAPMKS SPAFNAAPPR ATAFREDCWT EEATATLVNV WGRRYLETNR GSLRCEDWNQ  60
VALAVNERHG ATQKQVRTDV QCKNRIDTIK KRFKAEKARV CASGGAYVST WRFYDQLDML  120
IGQDKVEARK TPPAGSSWRG EAFPRGTRSG IGGGFGTGTR SRTPPMAIAL RREAKQLPEA  180
VAVTPLKRSG GMDDSFFRRN YSAMAAAAAK EEAYDEDDES EDEEQSEEER RYAKRRGKEV  240
AVDVEERGGV ELQMKEGTKM IAMAIHHFAE TYEKVEMEKL RYVKEVEVKR IDAGKEVELK  300
RMELMMSTQV QFEKMKRKEV KKKSSGLDGE HSFLLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216344.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A166IPJ70.0A0A166IPJ7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-35sequence-specific DNA binding transcription factors