PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARR-B | ||||||||
Protein Properties | Length: 193aa MW: 21678.8 Da PI: 6.2392 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 65.6 | 9.1e-21 | 142 | 190 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 r++W+ +LH+rFvea+ L G +A Pk+ile+m+++gLt+e+v+SHLQ DCAR_003871 142 DRVVWSGDLHDRFVEALIVL-GFYNAKPKKILEVMNIPGLTRENVASHLQ 190 69******************.9**************************** PP | |||||||
2 | Response_reg | 56.3 | 1.8e-19 | 12 | 96 | 22 | 109 |
TCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 22 gyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +e+v++++++ +al l+ k++D+++ D+ mp+m+G++l k+i++e +lp+i++++ ++ e l+ Ga f +Kp+ ++++ + DCAR_003871 12 AVENVTAVKHPYDALCALRLKTYDIVMSDVHMPNMNGIQLQKHINQEF-QLPVILISSDSQ--KQMEGLQNGAVYFMVKPVGIDDVKN 96 5689****************************************9999.9*******7776..778****************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 21.41 | 1 | 102 | IPR001789 | Signal transduction response regulator, receiver domain |
SMART | SM00448 | 0.0037 | 1 | 98 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-15 | 12 | 96 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.08E-15 | 14 | 99 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 7.3E-19 | 15 | 102 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-17 | 16 | 103 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 140 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-13 | 140 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-18 | 143 | 191 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MFGSSGEKSN PAVENVTAVK HPYDALCALR LKTYDIVMSD VHMPNMNGIQ LQKHINQEFQ 60 LPVILISSDS QKQMEGLQNG AVYFMVKPVG IDDVKNIWQF SVWWKSKINN STLPREINSH 120 SEEDLVRETA LSSDDIINAR SDRVVWSGDL HDRFVEALIV LGFYNAKPKK ILEVMNIPGL 180 TRENVASHLQ VS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017253538.1 | 1e-120 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A166IK65 | 1e-140 | A0A166IK65_DAUCS; Uncharacterized protein | ||||
STRING | EOY23087 | 8e-45 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3290 | 20 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-37 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003871 |