PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003857
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92903.1 Da    PI: 6.2124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003857genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181573357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  DCAR_003857 15 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                 6789*****************************************************97 PP

2START169.32.5e-531633692203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++++
  DCAR_003857 163 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIYMQ 259
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p       +vRa +lpSg+li+p+++g+s + +v+hvdl+ ++++++lr+l++s+++ 
  DCAR_003857 260 TYAPTTLASaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPPgppATCFVRADMLPSGYLIRPCDGGGSIINIVDHVDLDPWSVPEVLRPLYESSRIL 357
                  *************************************99988788899************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++k+++a l++ 
  DCAR_003857 358 AQKMTMASLRHI 369
                  *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6291074IPR001356Homeobox domain
SMARTSM003897.1E-151278IPR001356Homeobox domain
SuperFamilySSF466891.92E-161577IPR009057Homeodomain-like
CDDcd000864.05E-161575No hitNo description
PfamPF000465.6E-161573IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181773IPR009057Homeodomain-like
CDDcd146861.79E-667106No hitNo description
PROSITE profilePS5084825.045153381IPR002913START domain
CDDcd088751.31E-71157373No hitNo description
Gene3DG3DSA:3.30.530.202.1E-22161368IPR023393START-like domain
SMARTSM002341.1E-48162372IPR002913START domain
SuperFamilySSF559612.75E-37163374No hitNo description
PfamPF018525.0E-51163370IPR002913START domain
PfamPF086704.2E-48700844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MALTMHRDQG MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYMRTQLH  120
TPSTTTTDTS CESVVVSGQQ QQQNPTPQHP QRDANSPAGL LAIAEETLAE FLSKATGTAV  180
DWVQMVGMKP GPDSIGIVAV SRNCSGIAAR ACGLVSLEPT KVAEILKDRP SWFRDCRCLD  240
VLSVIPTGNG GTIELIYMQT YAPTTLASAR DFWTLRYTTT LEDGSLVICE RSLTSSTGGP  300
PGPPATCFVR ADMLPSGYLI RPCDGGGSII NIVDHVDLDP WSVPEVLRPL YESSRILAQK  360
MTMASLRHIR QIAQEASGEI QYTGGRQPAV LRTFSQRLCR GFNDAVNGFL DDGWSILGSD  420
GVEDVTIAIN SNPGKFVGSQ YNNTLSMLPT FGGVLCAKAS MLLQDVPPAL LVRFLREHRS  480
EWADYAIDAY SAASLKSSPY AIPYARPGAF PGTQVILPLA HTVEHEEFLE VVRLEGHAFS  540
PEDIALSRDM YLLQLCSGLD ENAAGGCAQL VFAPIDETCA DDAPLLPSGF RVIPLDPKSD  600
KPGASRTLDL ASTLEVGPGG ARPPGEADLT NYNVRSVLTI AFQFTYENHL RDNVAVMARQ  660
YVRSVVGSVQ RVAMAIAPSR LNTHVGPNPK QLPGSPEALT LSHWICRSYR VHIGADLLEV  720
DSRVGDAVLK QLWNHSDAIL CCSVKTNISP VFTFANQAGL DMLETTLVAL QDIMLDKVLD  780
EAGRKILLSE FSKIMQQGFA YLPAGICVSS MGRPISYDQA IAWKVLADDN SSHCLAFMFL  840
NWSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230337.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A166IJM30.0A0A166IJM3_DAUCS; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]