PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92903.1 Da PI: 6.2124 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ DCAR_003857 15 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 6789*****************************************************97 PP | |||||||
2 | START | 169.3 | 2.5e-53 | 163 | 369 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g+++l++++ DCAR_003857 163 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIYMQ 259 68999*****************************************************.8888888888***************************** PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p +vRa +lpSg+li+p+++g+s + +v+hvdl+ ++++++lr+l++s+++ DCAR_003857 260 TYAPTTLASaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPPgppATCFVRADMLPSGYLIRPCDGGGSIINIVDHVDLDPWSVPEVLRPLYESSRIL 357 *************************************99988788899************************************************** PP HHHHHHHHTXXX CS START 192 gaktwvatlqrq 203 ++k+++a l++ DCAR_003857 358 AQKMTMASLRHI 369 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.629 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-15 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-16 | 15 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.05E-16 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 5.6E-16 | 15 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 67 | 106 | No hit | No description |
PROSITE profile | PS50848 | 25.045 | 153 | 381 | IPR002913 | START domain |
CDD | cd08875 | 1.31E-71 | 157 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.1E-22 | 161 | 368 | IPR023393 | START-like domain |
SMART | SM00234 | 1.1E-48 | 162 | 372 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-37 | 163 | 374 | No hit | No description |
Pfam | PF01852 | 5.0E-51 | 163 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 4.2E-48 | 700 | 844 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MALTMHRDQG MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYMRTQLH 120 TPSTTTTDTS CESVVVSGQQ QQQNPTPQHP QRDANSPAGL LAIAEETLAE FLSKATGTAV 180 DWVQMVGMKP GPDSIGIVAV SRNCSGIAAR ACGLVSLEPT KVAEILKDRP SWFRDCRCLD 240 VLSVIPTGNG GTIELIYMQT YAPTTLASAR DFWTLRYTTT LEDGSLVICE RSLTSSTGGP 300 PGPPATCFVR ADMLPSGYLI RPCDGGGSII NIVDHVDLDP WSVPEVLRPL YESSRILAQK 360 MTMASLRHIR QIAQEASGEI QYTGGRQPAV LRTFSQRLCR GFNDAVNGFL DDGWSILGSD 420 GVEDVTIAIN SNPGKFVGSQ YNNTLSMLPT FGGVLCAKAS MLLQDVPPAL LVRFLREHRS 480 EWADYAIDAY SAASLKSSPY AIPYARPGAF PGTQVILPLA HTVEHEEFLE VVRLEGHAFS 540 PEDIALSRDM YLLQLCSGLD ENAAGGCAQL VFAPIDETCA DDAPLLPSGF RVIPLDPKSD 600 KPGASRTLDL ASTLEVGPGG ARPPGEADLT NYNVRSVLTI AFQFTYENHL RDNVAVMARQ 660 YVRSVVGSVQ RVAMAIAPSR LNTHVGPNPK QLPGSPEALT LSHWICRSYR VHIGADLLEV 720 DSRVGDAVLK QLWNHSDAIL CCSVKTNISP VFTFANQAGL DMLETTLVAL QDIMLDKVLD 780 EAGRKILLSE FSKIMQQGFA YLPAGICVSS MGRPISYDQA IAWKVLADDN SSHCLAFMFL 840 NWSFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017230337.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A166IJM3 | 0.0 | A0A166IJM3_DAUCS; Uncharacterized protein | ||||
STRING | VIT_10s0003g04670.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003857 |
Publications ? help Back to Top | |||
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