PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003842
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 324aa    MW: 36208.4 Da    PI: 6.7988
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003842genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.52.6e-22153203354
      G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                  ++ W+  LH+rFvea+  L G ++A+Pk ++++m+v+gLt+e+v+SHLQkYR
  DCAR_003842 153 KVMWSGGLHTRFVEALFIL-GYHRAVPKDLVQVMNVPGLTREQVASHLQKYR 203
                  789****************.9******************************9 PP
2Response_reg75.22.5e-2541071108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   +livdD+ + + +l+++l+k +y ev++++++ +al  l+e+ +Dl++ D+ mp+m+G+el k+i+e+  +lp+i+++a +     le ++ Ga  +
   DCAR_003842   4 ILIVDDDSTCLIILKTFLQKWNY-EVTAVKHPYDALSALRENSYDLVMSDVHMPNMNGYELQKHINEAF-RLPVILISADNR--AELEGIQNGAVYV 96 
                   8**********************.*******************************************99.********8776..889********** PP

                   EESS--HHHHH CS
  Response_reg  98 lsKpfdpeelv 108
                     Kp+++++l 
   DCAR_003842  97 MIKPISIDDLK 107
                   *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.8E-301111No hitNo description
SuperFamilySSF521721.57E-301114IPR011006CheY-like superfamily
SMARTSM004481.2E-242110IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.6673114IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-224107IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.50E-265107No hitNo description
Gene3DG3DSA:1.10.10.608.3E-21149208IPR009057Homeodomain-like
SuperFamilySSF466895.91E-15150208IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-19153204IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MFKILIVDDD STCLIILKTF LQKWNYEVTA VKHPYDALSA LRENSYDLVM SDVHMPNMNG  60
YELQKHINEA FRLPVILISA DNRAELEGIQ NGAVYVMIKP ISIDDLKYIW QFSVWWQKKI  120
NGTTPSFREI NNQSEVYVNT VPSNGIFSEK TGKVMWSGGL HTRFVEALFI LGYHRAVPKD  180
LVQVMNVPGL TREQVASHLQ KYRRFVKRMM DGTATEISMS QWIYMHCYST VVNGNPHLML  240
INQVKEAQRT GNLEAPSAAS NGSSSSGGLR ILPPFNPADA SLGMNISPMW IPSNYASSSV  300
DMTAEGLSNA ALGSVVKEDQ AHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-14153207357Transcription factor LUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242775.10.0PREDICTED: two-component response regulator ORR25-like
TrEMBLA0A166IJ480.0A0A166IJ48_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-45response regulator 2