PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003738
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 299aa    MW: 33751 Da    PI: 6.5045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003738genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-165497146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
      DCAR_003738 54 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 97
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-15451IPR009057Homeodomain-like
PROSITE profilePS512948.284848IPR017930Myb domain
SuperFamilySSF466898.24E-231095IPR009057Homeodomain-like
SMARTSM007176.0E-41250IPR001005SANT/Myb domain
PROSITE profilePS5129426.13649103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2552104IPR009057Homeodomain-like
SMARTSM007176.4E-1653101IPR001005SANT/Myb domain
PfamPF002492.1E-155497IPR001005SANT/Myb domain
CDDcd001672.79E-115696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLMRHITS HGLQRCGKSC RLRWINYLRP DLKRGSFTEQ  60
EERTIIDVHR ILGNRWAQIA KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP NTHNLLSLHK  120
NANNACNITT AASVFSLSTT SSTLTSHTKL TSFTPLPHEN ATKVDGFEFK NPKMFWTPTQ  180
NSESLIDFAN EFTPMNHSNF GVVNQENIMW GPSAGMDQNV GTIASQEMEL EEEAQQKKRF  240
EGNLMNNNNV NELTSMIEGM DHSFDADANF DFDFIEAALV PCGMYAGGNI IDQLAWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131037108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243622.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A166IFM60.0A0A166IFM6_DAUCS; Uncharacterized protein
STRINGXP_009783085.14e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-72myb domain protein 67