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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
DCAR_003687 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 344aa MW: 39193.8 Da PI: 10.272 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_003687 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 293.2 | 1.1e-89 | 40 | 343 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye.........paaslken....lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85
md+ g r+ +y+ p+ ++k++ + ++ +iaerda+ +er+ alse+kaa+ erd a + rd+a++er+ al er+ +l al
DCAR_003687 40 MDKGGR-ARHMEFYKgahsqwnmvPQYQMKDQnaflMPGKIAHIIAERDAAFEERDRALSERKAALEERDSAIQLRDAAISERDSALREREIALEALR 136
555554.59999999999999888555666441111455788899***************************************************** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
++e+++++a + ++ +g+k ++++ + p a++++e +++a+p++ +e +++++k r+ +k +k + k+kk +e+ +++ +
DCAR_003687 137 FQETTMSTAW--NNTIQRGSKRVHHVAN--YP--LVAAYNTKEGAITDAFPLQAISSEGVKAHQEKPRKPKKFVSSKSQLKAKKINEDL----NRHVT 224
**99976554..6778899999998877..22..2457778899999****99988888887777744443333333344666655555....55555 PP
GAGA_bind 184 derskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+ skae++ +l ++ ++ +Dest+P+PvCsCtG+++qCYkWGnGGWqS+CCttt S+yPLP+ +++r++R++grKmS+++f++lL +LaaeG+d
DCAR_003687 225 TDWSKAEWDAKNLgSMKQIIYDESTMPIPVCSCTGVQHQCYKWGNGGWQSSCCTTTKSQYPLPQLPNKRHSRMGGRKMSGNVFSRLLTRLAAEGHDTR 322
5569*********88*********************************************************************************** PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
p+DLk+hWAkHGtn+++tir
DCAR_003687 323 MPLDLKEHWAKHGTNRYITIR 343
********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MSLKFDSLQI GRFRGLRRVD IINSLVETKL SIFPLTCNFM DKGGRARHME FYKGAHSQWN 60
MVPQYQMKDQ NAFLMPGKIA HIIAERDAAF EERDRALSER KAALEERDSA IQLRDAAISE 120
RDSALREREI ALEALRFQET TMSTAWNNTI QRGSKRVHHV ANYPLVAAYN TKEGAITDAF 180
PLQAISSEGV KAHQEKPRKP KKFVSSKSQL KAKKINEDLN RHVTTDWSKA EWDAKNLGSM 240
KQIIYDESTM PIPVCSCTGV QHQCYKWGNG GWQSSCCTTT KSQYPLPQLP NKRHSRMGGR 300
KMSGNVFSRL LTRLAAEGHD TRMPLDLKEH WAKHGTNRYI TIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
