PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003513
Common NameC-EF2
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 159aa    MW: 17693 Da    PI: 7.6096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003513genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-181361355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  DCAR_003513 13 YRGVRKRK-WGKWVSEIREP---GKKARIWLGSYEAPEMAAAAYDVAALHLRG 61
                 9****999.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7871269IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-211270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-311270IPR001471AP2/ERF domain
SMARTSM003804.0E-361275IPR001471AP2/ERF domain
PfamPF008479.7E-121261IPR001471AP2/ERF domain
PRINTSPR003677.3E-131324IPR001471AP2/ERF domain
CDDcd000183.50E-211371No hitNo description
PRINTSPR003677.3E-135171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNQQGRLSQE QSYRGVRKRK WGKWVSEIRE PGKKARIWLG SYEAPEMAAA AYDVAALHLR  60
GSAAHLNFPE LVGSLPKPVG SSHADVQRAA QEAAMGFGKS ENRGPVTVQL SSSEIRAINE  120
SPLDSPKMWM EMGGSVFLEE RRDEEQLEEM QCSSLWKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-18874168ATERF1
3gcc_A3e-18874168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882900.0AB188290.1 Daucus carota C-EF2 mRNA for embryonic element binding Factor 2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222370.11e-113PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_017222508.11e-113PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I29e-44ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A166I8D71e-112A0A166I8D7_DAUCS; Uncharacterized protein
STRINGGorai.005G116500.15e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.12e-41ERF family protein