PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003429
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 303aa    MW: 34318.6 Da    PI: 4.6677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003429genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l++ +   G  +W+++++  g+ R++k+c++rw +yl
      DCAR_003429 14 KGPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.21.2e-1571111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E+ l +d++ qlG++ W++Ia+ ++ gRt++++k++w+++
      DCAR_003429  71 SEYEENLVIDLHSQLGNR-WSKIASNLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.046961IPR017930Myb domain
SuperFamilySSF466895.08E-2611108IPR009057Homeodomain-like
SMARTSM007177.5E-121363IPR001005SANT/Myb domain
PfamPF002495.8E-141461IPR001005SANT/Myb domain
CDDcd001673.63E-81661No hitNo description
PROSITE profilePS5129425.8662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2364116IPR009057Homeodomain-like
SMARTSM007171.3E-1366114IPR001005SANT/Myb domain
PfamPF002492.1E-1371111IPR001005SANT/Myb domain
CDDcd001674.36E-1074112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEENLVID LHSQLGNRWS KIASNLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPLP PPPPPPEPAQ DQQNPKSPEV LETVTIQEDE NQSLSEADPS MEVINNGFCT  180
DEVPLIEPHE ILVSESSVPC SSSSTSTSST TNINNLLEDL EFLPSFEWLN GDACTPNNLG  240
FWDMHDDFNY MDLLNNDIDT ADRNNDIFTV NPPLPPPPAA HHDFNQYSRM VMDEESWKFE  300
LM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240591.10.0PREDICTED: protein ODORANT1
SwissprotQ9C7U74e-94MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A162B6Y00.0A0A162B6Y0_DAUCS; Uncharacterized protein
STRINGcassava4.1_012272m1e-110(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-94myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]