PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003409
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 600aa    MW: 67976.2 Da    PI: 6.6533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003409genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.8e-32118553128
          NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s ++++vg+kktLv+y+grap+g ++dWvmheyrl
  DCAR_003409  11 SKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVNS-QNRAVGMKKTLVYYRGRAPHGLRSDWVMHEYRL 85 
                  4567**************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.231110IPR003441NAC domain
SuperFamilySSF1019416.02E-3811110IPR003441NAC domain
PfamPF023656.9E-161685IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MMKKGKSLLP SKDLEWYFFS PRDRKYPNGS RTNRATRAGY WKATGKDRKV NSQNRAVGMK  60
KTLVYYRGRA PHGLRSDWVM HEYRLDEREC ETASGLQMQD AYALCRIFKK SLVAPKVEDR  120
NYCVTANHNS SRNIQIYSEG RGEENMDISD YAMPPLSPYT STNNFVRHGP PHCSSSRSTA  180
DARWMQGLSD DSNPFTNPAF SDCNPGSYQP SNGVQLECAR MQQGLSLPPL QVHDFPQAGF  240
VSLNNTQPSS AMYGNTVTNH QQDILNEIIS VAQVSEEMMN QNSWIKENGS AQDDFSFLNH  300
NNQDQGMNMA RSIEASGSNE QFNNQRMAEN LRWVGMSGND YEKTFLEEYK TVPIQNIPDF  360
QRAEHEVKGE TSHLYNFDDP EGNEDFSLGL LVDDNPDDCN FLLDEADLGD FSSSQVIEVY  420
EKIEVNQGLL VSTRQVPETF FHQLHPSETV KVYLNPVKLN HFPIAKVLAS TTKPKDIHLS  480
DKFKATKPCR KRDNPVISLI AVIFTYFLHF GQHCDRSVKG WNGIETRDYD EEQKVGFVGR  540
MVGSSSVVVN KLWHCLSFAL AISTIWMQDQ MYSMITGGPI YSLIPVRPVK SRGSMPCKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-32811661171NO APICAL MERISTEM PROTEIN
1ut4_B9e-32811661171NO APICAL MERISTEM PROTEIN
1ut7_A9e-32811661171NO APICAL MERISTEM PROTEIN
1ut7_B9e-32811661171NO APICAL MERISTEM PROTEIN
3swm_A9e-32811664174NAC domain-containing protein 19
3swm_B9e-32811664174NAC domain-containing protein 19
3swm_C9e-32811664174NAC domain-containing protein 19
3swm_D9e-32811664174NAC domain-containing protein 19
3swp_A9e-32811664174NAC domain-containing protein 19
3swp_B9e-32811664174NAC domain-containing protein 19
3swp_C9e-32811664174NAC domain-containing protein 19
3swp_D9e-32811664174NAC domain-containing protein 19
4dul_A9e-32811661171NAC domain-containing protein 19
4dul_B9e-32811661171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217728.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLA0A162B6V50.0A0A162B6V5_DAUCS; Uncharacterized protein
STRINGVIT_04s0079g00280.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-110NAC domain containing protein 28