PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003260

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 360aa MW: 41432.3 Da PI: 7.1785

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003260	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1.1e-49	26	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + DCAR_003260 26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENLRS 122 79*************************.89***********8778899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl DCAR_003260 123 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 151 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-53	25	161	IPR003441	NAC domain
PROSITE profile	PS51005	52.977	25	204	IPR003441	NAC domain
Pfam	PF02365	5.2E-25	27	151	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-53	192	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSQNHNNQEN KDHDDDNDEH EHDMVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL 60 DLYRYDPWEL PALAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRTENL 120 RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPHHETERLQ KANMLSIHLS YIPTFQVKNM 180 LLSSHFISVN IMQAEISLCK VYKRPGVEDH PSLPRSLPTR ASSSSRTHDN KQYQDAAQHQ 240 AMEKFHVFGD QTLPQTSEKI SETISGNSTT EDVGTALGLS NQNPYIQLPP ITPMLPPPLD 300 CNTIYNPNPN LVMTSPNTID DLHRLISYQQ ASVNQPHQLF PNHNNPNHHX PATPVVSQS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSQNHNNQEN KDHDDDNDEH EHDMVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL  60
DLYRYDPWEL PALAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRTENL  120
RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPHHETERLQ KANMLSIHLS YIPTFQVKNM  180
LLSSHFISVN IMQAEISLCK VYKRPGVEDH PSLPRSLPTR ASSSSRTHDN KQYQDAAQHQ  240
AMEKFHVFGD QTLPQTSEKI SETISGNSTT EDVGTALGLS NQNPYIQLPP ITPMLPPPLD  300
CNTIYNPNPN LVMTSPNTID DLHRLISYQQ ASVNQPHQLF PNHNNPNHHX PATPVVSQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-53	27	151	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-53	27	151	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-53	27	151	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-53	27	151	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	27	151	22	145	NAC domain-containing protein 19
3swm_B	1e-52	27	151	22	145	NAC domain-containing protein 19
3swm_C	1e-52	27	151	22	145	NAC domain-containing protein 19
3swm_D	1e-52	27	151	22	145	NAC domain-containing protein 19
3swp_A	1e-52	27	151	22	145	NAC domain-containing protein 19
3swp_B	1e-52	27	151	22	145	NAC domain-containing protein 19
3swp_C	1e-52	27	151	22	145	NAC domain-containing protein 19
3swp_D	1e-52	27	151	22	145	NAC domain-containing protein 19
4dul_A	8e-53	27	151	19	142	NAC domain-containing protein 19
4dul_B	8e-53	27	151	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239322.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9ZVP8	1e-107	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A166I028	0.0	A0A166I028_DAUCS; Uncharacterized protein
STRING	EOY26392	1e-136	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-109	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	DCAR_003260

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]