PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 93aa MW: 10257.8 Da PI: 7.1821 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 64.3 | 2.5e-20 | 10 | 79 | 1 | 70 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 l++ L++ A++v++g+ e+a+ L+++s+l+spdgd+mqR+aa+fteALa r+++ +++l kal++++ + DCAR_003241 10 LIHILVTTANHVAAGSIENANISLEQISHLSSPDGDTMQRIAAHFTEALADRMLKRWPGLHKALNSTKIT 79 6899************************************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.882 | 1 | 92 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-18 | 10 | 79 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MKLEERGLYL IHILVTTANH VAAGSIENAN ISLEQISHLS SPDGDTMQRI AAHFTEALAD 60 RMLKRWPGLH KALNSTKITL VSEERLGHYV LL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256387.1 | 4e-49 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 1e-36 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A166HZL1 | 2e-60 | A0A166HZL1_DAUCS; Uncharacterized protein | ||||
STRING | EOY17606 | 2e-42 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 4e-39 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003241 |
Publications ? help Back to Top | |||
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