PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003210
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 313aa    MW: 35204.2 Da    PI: 4.9532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003210genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-142168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  +  + G g+W+ Ia+  g+ R++k+c++rw +yl
      DCAR_003210 21 KGLWSPEEDEKLMVYMLRNGQGCWTDIAKNAGLQRCGKSCRLRWINYL 68
                     678*******************************************97 PP
2Myb_DNA-binding48.42.2e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E++l+++++  lG++ W+ Ia++++ gRt++++k++w++
      DCAR_003210  74 RGSFSLQEEQLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-221671IPR009057Homeodomain-like
PROSITE profilePS5129416.2141668IPR017930Myb domain
SuperFamilySSF466892.81E-2819115IPR009057Homeodomain-like
SMARTSM007172.5E-102070IPR001005SANT/Myb domain
PfamPF002497.8E-142168IPR001005SANT/Myb domain
CDDcd001676.65E-92468No hitNo description
PROSITE profilePS5129424.51369123IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2572123IPR009057Homeodomain-like
SMARTSM007174.1E-1573121IPR001005SANT/Myb domain
PfamPF002493.6E-1474117IPR001005SANT/Myb domain
CDDcd001671.81E-1076116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKPADQTEK ASNKGNVKLR KGLWSPEEDE KLMVYMLRNG QGCWTDIAKN AGLQRCGKSC  60
RLRWINYLRP DLKRGSFSLQ EEQLIIHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKDSVIST TSPNNSISSD PINGITGGMI SFEEHELMNF CMDSISATTS SSSMQNSITS  180
ATYQFDPFPP LQDNSHEINI APRLFNVPNH SVEGGILDDY GGFEQYVTGF ENDLSVPSLE  240
NDGNAELMFD KRSSNGKYLI DVDQSIKVED FDFGTNNHWQ GGQNLKTGSD QLDWESLLAN  300
VSFSPYLDFQ IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29191235108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221214.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A166HYR80.0A0A166HYR8_DAUCS; Uncharacterized protein
STRINGEOX966931e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.19e-68myb domain protein 46