PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15234.4 Da PI: 10.5604 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.3 | 1.6e-12 | 70 | 118 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 ++y+G r +k +g W AeIr p + +r +lg++ taeeA + + + +k++ DCAR_003079 70 PKYPGARLRK-WGNWCAEIRNPI----TkRRQWLGTYPTAEEASRVYLEKKKEF 118 799999*999.**********72....36*******************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-6 | 70 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.22E-16 | 70 | 111 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-13 | 71 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 71 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.987 | 71 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-6 | 71 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEAAPATATK VSRKKAQPTK EGMKRPKPTK VSVVRIKYTD PDATDDSSSD ETTSSPKQVV 60 HEVHLRKTSP KYPGARLRKW GNWCAEIRNP ITKRRQWLGT YPTAEEASRV YLEKKKEFGE 120 FVKNSKDQIK TSPC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225670.1 | 6e-95 | PREDICTED: ethylene-responsive transcription factor ERF117-like | ||||
Swissprot | Q9M9B2 | 6e-16 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | A0A162B5W8 | 1e-93 | A0A162B5W8_DAUCS; Uncharacterized protein | ||||
STRING | Bra024743.1-P | 9e-19 | (Brassica rapa) | ||||
STRING | Migut.E00336.1.p | 3e-19 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 5e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003079 |