PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 16972.1 Da PI: 6.2664 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.6e-15 | 11 | 55 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e + r v fskRr+g++KKA+ L L +a +a+++fs+ gk DCAR_002889 11 KRKEKQQDRMVAFSKRRKGLFKKAHQLHALSAAHIAILVFSPAGK 55 56788999***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-19 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.904 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-21 | 4 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-14 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-17 | 14 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-14 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-14 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MGTGKKKIEI KRKEKQQDRM VAFSKRRKGL FKKAHQLHAL SAAHIAILVF SPAGKPYVCG 60 DPCFDDIVDK YYSGATANAA ADDNDVVNCN NRSTYGDGND ADEDCKEIGE LKLWLKRMDF 120 DGSDNVDDLL LAKNDLEQVR DKLIKNVADY GE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 27 | KRKEKQQDRMVAFSKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251885.1 | 1e-109 | PREDICTED: floral homeotic protein APETALA 1-like | ||||
TrEMBL | A0A162B5F6 | 1e-107 | A0A162B5F6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-09 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002889 |