PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 359aa    MW: 40184.9 Da    PI: 4.4523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002875genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEd++l ++++  G g+W++ ++  g+ R++k+c++rw +yl
      DCAR_002875 14 RGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWVNYL 61
                     8*******************************99************97 PP

2Myb_DNA-binding51.32.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +Ede +++++  lG++ W +Ia++++ gRt++++k++w+++l
      DCAR_002875  67 RGKFSSDEDETIIKLHSSLGNR-WCLIASHLP-GRTDNEIKNYWNSHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.918961IPR017930Myb domain
SuperFamilySSF466898.17E-2811108IPR009057Homeodomain-like
SMARTSM007176.6E-121363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-211568IPR009057Homeodomain-like
CDDcd001671.18E-81661No hitNo description
PROSITE profilePS5129425.10962116IPR017930Myb domain
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.21E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCEKV GLNRGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWVNY  60
LKSDLKRGKF SSDEDETIIK LHSSLGNRWC LIASHLPGRT DNEIKNYWNS HLSRQIYKFR  120
KIIQQLNHEP VVVDQPVPKS RTTDVAPKPP VKRTRKSITK KDTKVPDNSP DQKVVDKSPE  180
SATSSRDLGN GGSLVIMPAT PALEEDVMSS MINLDIPEDK ETMDDIFLSS FLDDIVSDQG  240
LEADLNLQTL NQVPVGDPNG ELLLSNADVE NWLMDDGNTI MPNPSLMPEG EKYDLKNGEL  300
DVLGWDCGGN MDWDGGFEDQ NLWDSEDEKL FSGLWETSCD KGDDGDHKQD AIVEWLFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243670.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLA0A166HGC50.0A0A166HGC5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-73myb domain protein 111