PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_002875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 40184.9 Da PI: 4.4523 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l ++++ G g+W++ ++ g+ R++k+c++rw +yl DCAR_002875 14 RGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWVNYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ede +++++ lG++ W +Ia++++ gRt++++k++w+++l DCAR_002875 67 RGKFSSDEDETIIKLHSSLGNR-WCLIASHLP-GRTDNEIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.918 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.17E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.109 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MGRAPCCEKV GLNRGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWVNY 60 LKSDLKRGKF SSDEDETIIK LHSSLGNRWC LIASHLPGRT DNEIKNYWNS HLSRQIYKFR 120 KIIQQLNHEP VVVDQPVPKS RTTDVAPKPP VKRTRKSITK KDTKVPDNSP DQKVVDKSPE 180 SATSSRDLGN GGSLVIMPAT PALEEDVMSS MINLDIPEDK ETMDDIFLSS FLDDIVSDQG 240 LEADLNLQTL NQVPVGDPNG ELLLSNADVE NWLMDDGNTI MPNPSLMPEG EKYDLKNGEL 300 DVLGWDCGGN MDWDGGFEDQ NLWDSEDEKL FSGLWETSCD KGDDGDHKQD AIVEWLFS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017243670.1 | 0.0 | PREDICTED: myb-related protein Zm38-like | ||||
TrEMBL | A0A166HGC5 | 0.0 | A0A166HGC5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49330.1 | 6e-73 | myb domain protein 111 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_002875 |