PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_002636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 268aa MW: 29356.5 Da PI: 6.281 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.9 | 1.4e-15 | 10 | 38 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk +l+lm+v gLt++hvkSHLQ+YR+ DCAR_002636 10 ATPKLVLQLMDVRGLTISHVKSHLQMYRS 38 9***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.3E-5 | 8 | 39 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-10 | 9 | 39 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 10 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MSSCARTGGA TPKLVLQLMD VRGLTISHVK SHLQMYRSMK TDPNVEEGGS SFVNQSRKKG 60 CKEEEDDNDG SIEEETSVGY LASLQKPLMQ VSNSHHSHFG FNTSPKPPAK RARITDQNLQ 120 CNQHETMSMN RYSYKSYMGA QKSEEDPIST AFSPAHQFFH NLSLFTHALM GDSYLPEVAE 180 QEDKACTAVR RKRKLDEDPL NPENIHDGCG LSLSLSLQHP STQKSNASSM SDISEAISSS 240 YFNANLSNST GSSQELNLDL SISLSGA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216707.1 | 0.0 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | A0A166H9N0 | 0.0 | A0A166H9N0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5433 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-14 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_002636 |