PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002608
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 297aa    MW: 31971.6 Da    PI: 7.0797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002608genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86.1e-091255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT e d+ + ++ + ++ +   +W++Ia+ ++ g+t ++++ +++
      DCAR_002608 12 WTREQDKSFENGLAIYPEDledRWERIAADVP-GKTVEEIIQHYN 55
                     ********************************.***********7 PP
2Myb_DNA-binding445.2e-14119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      DCAR_002608 119 SWSEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                      5*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-4657IPR009057Homeodomain-like
PROSITE profilePS512937.523761IPR017884SANT domain
SMARTSM007171.0E-6860IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-101165IPR009057Homeodomain-like
PfamPF002494.7E-71255IPR001005SANT/Myb domain
CDDcd001671.13E-81255No hitNo description
PROSITE profilePS5129417.296112168IPR017930Myb domain
SuperFamilySSF466899.33E-17114169IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-17116166IPR006447Myb domain, plants
SMARTSM007171.7E-11116166IPR001005SANT/Myb domain
CDDcd001676.78E-11119164No hitNo description
PfamPF002495.3E-12119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11119162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSGDESAKCS IWTREQDKSF ENGLAIYPED LEDRWERIAA DVPGKTVEEI IQHYNILIGD  60
LSRIESGCVP LPRYDTSADD LTGQVGDEGT GRKGGNSGQY GVDGGKASRA EQERRKGISW  120
SEEEHRLFLL GLEKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITNVNDVAV PQGTITGQTN GSSGGSSNKP SKELSQAPSL LEGVLVYGGT TIGQPVGGHL  240
VSAIGTPVHP LQHMAFSVRA PVHGQMVPVA PMNMGAPVNT VPGSSAYPVP HSSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1512811180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229868.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
RefseqXP_017229869.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
RefseqXP_017229870.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
RefseqXP_017229871.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ9FNN62e-98SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A166H8X70.0A0A166H8X7_DAUCS; Uncharacterized protein
STRINGXP_007153178.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.18e-93MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]