PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 248aa MW: 26652.8 Da PI: 9.8693 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.6e-39 | 27 | 126 | 2 | 99 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaa. 95 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s +sn+s + + +k+a+ DCAR_002594 27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-TVSVSLRNSNNSLSaplE-QKQAPq 122 789******************************************************************888.444444444333332221.222211 PP TCP 96 kskk 99 +++ DCAR_002594 123 LNQH 126 2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.892 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.8E-36 | 33 | 127 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSSPPPPPLP DSQKQLATAT PTNGTVAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPANFSTV SVSLRNSNNS LSAPLEQKQA 120 PQLNQHLFTP TPFILGKRAR EEDSIRAGEE KSDEVSEHSV GPAGGFWALP GRPDYGQVWS 180 FAAGSDMVVP TPVNMSQQNR YMQVQGEASA ARVGNYLPIT QGHLNLLASL SGSHQQSGGG 240 RREEDHH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ148753 | 0.0 | FJ148753.1 Daucus carota subsp. sativus clone BAC C155J02 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238778.1 | 0.0 | PREDICTED: transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-81 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A166H8G5 | 0.0 | A0A166H8G5_DAUCS; Uncharacterized protein | ||||
STRING | Solyc04g009180.1.1 | 1e-95 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002594 |