PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39542.9 Da PI: 4.7572 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l +++ q G g+W++ ar g++Rt+k+c++rw++yl DCAR_002524 36 RGPWTIEEDFALMNYISQNGEGRWNSLARSAGLKRTGKSCRLRWLNYL 83 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ DCAR_002524 89 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 132 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.282 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 36 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-21 | 37 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.92E-10 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 89 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.80E-8 | 109 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDVKGERNSE EIVPMMMNNS SDDQEDEMMM EEDLRRGPWT IEEDFALMNY ISQNGEGRWN 60 SLARSAGLKR TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQHLPG 120 RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAG GNTGACSAAA 180 PGESSLAIAT GDSSFTTANP TCYNTNNISN SGFSSQVMVP QTNGMMYNSY EGMIQSSMNN 240 SSSFTPANSG TTGSSDSFGR SQVSPVSDMT DCYNYPPVNP KPNQDYYFQD QLGFTDTLVS 300 PMGYYNSNAG FQCMEPNTSN PWMDGGDLSD NLWSVEDMCL LSQQFNNNNI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 33 | 136 | 4 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234216.1 | 0.0 | PREDICTED: transcription factor MYB108 | ||||
TrEMBL | A0A169WTJ0 | 0.0 | A0A169WTJ0_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0010s15970.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 2e-84 | myb domain protein 108 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002524 |