PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002499
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 161aa    MW: 17219.5 Da    PI: 8.7922
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002499genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-163568134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C  C tt TplWR gp+g+k+LCnaCG+++ k +
  DCAR_002499 35 CWDCETTRTPLWRTGPSGPKSLCNACGIRFGKLR 68
                 889***************************8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-112992IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.9652962IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-123369No hitNo description
Gene3DG3DSA:3.30.50.102.9E-153369IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.34E-113486No hitNo description
PfamPF003203.6E-143568IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403560IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVDRNERGSN SDEISSRTPV RIPTTGTLIL PAKTCWDCET TRTPLWRTGP SGPKSLCNAC  60
GIRFGKLRKE LELLGLVSPK VVRKRNSTKS SSLNMSTVTS DRSSGNNNVG EAFNKPADLG  120
GSGNGELVSE NLRSRLFEAA SVVQGEMEQA ALILMAMSCD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251086.11e-113PREDICTED: GATA transcription factor 16
TrEMBLA0A162B4C01e-111A0A162B4C0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-16GATA transcription factor 16