PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002297
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 264aa    MW: 30297 Da    PI: 9.853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002297genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.3e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++vk++G g+W+++ar  g++R +k+c++rw +yl
      DCAR_002297 16 KGPWTAEEDRLLTEYVKLHGEGRWNSVARLQGLKRNGKSCRLRWVNYL 63
                     79******************************99************97 PP
2Myb_DNA-binding537.9e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
      DCAR_002297  69 RGQITPHEENIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7021163IPR017930Myb domain
SuperFamilySSF466892.02E-3013110IPR009057Homeodomain-like
SMARTSM007173.4E-161565IPR001005SANT/Myb domain
PfamPF002495.5E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231770IPR009057Homeodomain-like
CDDcd001673.78E-121863No hitNo description
PROSITE profilePS5129424.81364118IPR017930Myb domain
SMARTSM007175.0E-1568116IPR001005SANT/Myb domain
PfamPF002493.4E-1469113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2471117IPR009057Homeodomain-like
CDDcd001675.94E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAENMGWGVV EEGWRKGPWT AEEDRLLTEY VKLHGEGRWN SVARLQGLKR NGKSCRLRWV  60
NYLRPDLKRG QITPHEENII IELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKKSKV  120
SPGDGAKSKA RVLRRQQFQQ QQLLLQQQQK QYEVDMKRVM SNLQDGSQER MPSLPLQQLM  180
MKPQDSMGSS NSYPHTGDHD QENGHSSMAM ISFNGYASVA ESSNEQDIFW DGSLWNLDDF  240
QGNYSAVSAA TRATLQSLAT PLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239855.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A166H2J30.0A0A166H2J3_DAUCS; Uncharacterized protein
STRINGGorai.006G254200.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-82myb domain protein 305