PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002189

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 977aa MW: 110982 Da PI: 7.0938

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002189	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.6	1.2e-13	574	617	2	45
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 e++is+e+l+k+F p+ dAAk+ g ++ Kr CR +GIkRW DCAR_002189 574 EESISFENLRKHFGRPLDDAAKSFGGNRSTFKRVCRDHGIKRWK 617 789****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.083	563	647	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-12	577	616	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-16	664	745	No hit	No description
PROSITE profile	PS51745	21.19	668	750	IPR000270	PB1 domain
SMART	SM00666	1.4E-17	668	748	IPR000270	PB1 domain
Pfam	PF00564	1.5E-15	669	745	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.2E-18	669	745	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MGLGNDHENQ SNTQLREKIF VYLERFYCSI IEKTQSSGNI LVQFWVADIV TRAKGRQYCE 60 LRTQSQLFYH DQSDDRRLLS YRNHVVARSF RVSAGQEEDE GDDENWQELL GITGSVFKNK 120 KAEVSPRISH YSTDEYPERD FALSCGIQAS LCLPLFATDD FSGHPNGVIE LVFTSEEDFH 180 HLKPYIYYYY SVHSTLRMPE VKSILRSNIS CISISPDILN EIDHVLAVVS ETFQVPLAQC 240 WLSRDHSVGE YTVINQKGSL DYNNLVPWSK FKEACLQSYL DMGDGLVGRT FMSHTAFFCS 300 EITKLSIRSY PLAHYLGNCG SVDCFTMCLH NYTTGDKDYV IEFFLPHEQM DSQCPESLLN 360 SLLETLRQHF KTFVLASGEK LGTEMSVKVI DSFMYHESES FKIVCPNLSF PRQKIQQPGR 420 GVSWLTPSAW KLQWDTDTNF LLSVPCLSPL GSPKRLDQNV QVIETSGSSN SFSEDVSKTE 480 IPTRMKINRN VLTEESPGEE SQPLTFQSKK TIPRQEGKEG TQLLDPLAQQ LVLDDALQSQ 540 KKGLALGMEN FNTDIHIVNK TRIEVTSDRE NNSEESISFE NLRKHFGRPL DDAAKSFGGN 600 RSTFKRVCRD HGIKRWKSGK RRMGKNISSK LEGELNDEES SKRNFSHSGM APVEDRTVVA 660 HKIQDTNKMT VKATYNGVTI KFELSNLSGI TELQDKVIER LQVERKCFSI KYQDDEGDWI 720 LIACDKDVQE CIEISRSLKK TTIRMAFPSS NSASCVLLTT SNACYEHEKL YGRYVLDSQI 780 YCIILHVIGL LLKKFIVNYF PTQLNVAFFN ITPLRARENG NRAIVGIFGI AASVLLSAVQ 840 LKYQARTDSP FQDHPKAMTI AIASLLIFCF GCYVEQYLSS TRRSSTSAAL LHHFVRLLGF 900 ISLAYLASVI FSTSTSSIPS LIVFLIFPCF FSARFVFHWI RYRNLHGNRG AYNAPNSYFN 960 YIDTLPVYHI RSPNPV*

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MGLGNDHENQ SNTQLREKIF VYLERFYCSI IEKTQSSGNI LVQFWVADIV TRAKGRQYCE  60
LRTQSQLFYH DQSDDRRLLS YRNHVVARSF RVSAGQEEDE GDDENWQELL GITGSVFKNK  120
KAEVSPRISH YSTDEYPERD FALSCGIQAS LCLPLFATDD FSGHPNGVIE LVFTSEEDFH  180
HLKPYIYYYY SVHSTLRMPE VKSILRSNIS CISISPDILN EIDHVLAVVS ETFQVPLAQC  240
WLSRDHSVGE YTVINQKGSL DYNNLVPWSK FKEACLQSYL DMGDGLVGRT FMSHTAFFCS  300
EITKLSIRSY PLAHYLGNCG SVDCFTMCLH NYTTGDKDYV IEFFLPHEQM DSQCPESLLN  360
SLLETLRQHF KTFVLASGEK LGTEMSVKVI DSFMYHESES FKIVCPNLSF PRQKIQQPGR  420
GVSWLTPSAW KLQWDTDTNF LLSVPCLSPL GSPKRLDQNV QVIETSGSSN SFSEDVSKTE  480
IPTRMKINRN VLTEESPGEE SQPLTFQSKK TIPRQEGKEG TQLLDPLAQQ LVLDDALQSQ  540
KKGLALGMEN FNTDIHIVNK TRIEVTSDRE NNSEESISFE NLRKHFGRPL DDAAKSFGGN  600
RSTFKRVCRD HGIKRWKSGK RRMGKNISSK LEGELNDEES SKRNFSHSGM APVEDRTVVA  660
HKIQDTNKMT VKATYNGVTI KFELSNLSGI TELQDKVIER LQVERKCFSI KYQDDEGDWI  720
LIACDKDVQE CIEISRSLKK TTIRMAFPSS NSASCVLLTT SNACYEHEKL YGRYVLDSQI  780
YCIILHVIGL LLKKFIVNYF PTQLNVAFFN ITPLRARENG NRAIVGIFGI AASVLLSAVQ  840
LKYQARTDSP FQDHPKAMTI AIASLLIFCF GCYVEQYLSS TRRSSTSAAL LHHFVRLLGF  900
ISLAYLASVI FSTSTSSIPS LIVFLIFPCF FSARFVFHWI RYRNLHGNRG AYNAPNSYFN  960
YIDTLPVYHI RSPNPV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017259069.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A162B3J6	0.0	A0A162B3J6_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12836	2	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-37	NIN like protein 7

Link Out ? help Back to Top
Phytozome	DCAR_002189