PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002147
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 578aa    MW: 63978.5 Da    PI: 5.7561
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002147genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.3e-10292342155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +l      eeAa+a++ a+ k++g
  DCAR_002147 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLXVSTQ-EEAAEAYDVAAIKFRG 342
                  57****************988533...59999998888.*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-11292351IPR016177DNA-binding domain
PfamPF008471.3E-5292342IPR001471AP2/ERF domain
CDDcd000189.42E-20292352No hitNo description
PROSITE profilePS5103214.961293350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-12293350IPR001471AP2/ERF domain
SMARTSM003801.4E-24293356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MASSVNNWLG FSLSPQEHQD HHSIYNSDEI SGTTDCYGLS TESLIPSLNL PPPFGYPAES  60
FSRNNLQDWN SDTNYNTNGS ELSILMDSNK PKLENFLGTS EHTFLDDHQH HNSSSDQHQY  120
LFHNNTNSLH QSADVAMVET TAGGGEMNSK GNGSFGLSMI KNWLRNNSAA SAPQENNGER  180
GLPSSSQTLS LSMGSQSSHP EAGSCGGGGE ISSETKANGG EVTAVKKSVE TFGQRTSIYR  240
GVTRNFDNVH GEIVNLQMTS YEKEIEDMKN MTRQEFVASI RRKSSGFSRG ASIYRGVTRH  300
HQHGRWQARI GRVAGNKDLY LXVSTQEEAA EAYDVAAIKF RGITAVTNFE INRYDVKSIL  360
ESNSLPLVGA TKRLKEAELH NAQKIEEGIQ SYNFSQQNTW PNIAFQQAQP LSMNYPRYDS  420
HQNMWCKQEV QDSDQALAQS YRDLHQQGSN VHNFFQSNLM NFDTSSTDQN SSSNMYNGNY  480
MIPTNAIEGN QNQGYGENNV STCDNPYGEM NSSYNARNLY YLSQQSSGTP LKVANVCDQT  540
SACNNWIPTA VPALAPRNTN SMALCHGATN FTMWNDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243658.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A166GY810.0A0A166GY81_DAUCS; Uncharacterized protein
STRINGEOY097221e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.14e-81AP2 family protein