PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002070
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 292aa    MW: 33136.2 Da    PI: 5.1285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002070genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-132069148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++    G +  +W+ +a+  g+ R++k+c++rw +yl
      DCAR_002070 20 KGLWSPEEDEKLKEYMFGNGENggCWSDVAKNAGLQRCGKSCRLRWINYL 69
                     678************9999988**************************97 PP
2Myb_DNA-binding42.61.4e-1375118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ + E+ l+v ++  lG++ W++Ia++++ gRt++++k++w++
      DCAR_002070  75 RGPFCPVEQNLIVYLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNS 118
                      7889999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-201371IPR009057Homeodomain-like
PROSITE profilePS5129414.7361569IPR017930Myb domain
SuperFamilySSF466892.15E-2518116IPR009057Homeodomain-like
SMARTSM007172.2E-101971IPR001005SANT/Myb domain
PfamPF002492.4E-122069IPR001005SANT/Myb domain
CDDcd001678.84E-82369No hitNo description
PROSITE profilePS5129421.63270124IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2472125IPR009057Homeodomain-like
SMARTSM007177.1E-1274122IPR001005SANT/Myb domain
PfamPF002491.7E-1175118IPR001005SANT/Myb domain
CDDcd001672.87E-880117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MMMRKGASED PEKKNKKMKK GLWSPEEDEK LKEYMFGNGE NGGCWSDVAK NAGLQRCGKS  60
CRLRWINYLR PDLKRGPFCP VEQNLIVYLH SVLGNKWSKI AAHLPGRTDN EIKNFWNSTI  120
KKRLKNSSST SIASPNTSDS SSEPYKDSVL AGIFPMQAHS NNIVSMYLEP SSFLQPMATN  180
LSGLPIDDNN HINIHAEHRR RPCFQGVSNS LTANEVQADD EVFENDLEIE EEQFVLHMEN  240
MNMKSDIKIE SDLNNWNNNA DMQTCGNCEG GDEVRLEEWV EELMRDVSFL P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231512422128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258338.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A166GW200.0A0A166GW20_DAUCS; Uncharacterized protein
STRINGGorai.006G129100.14e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-58myb domain protein 46