PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002069
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 293aa    MW: 32699.1 Da    PI: 8.2166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002069genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.51.2e-27191531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                  lppG+rF P+d+ l++ yL++k + ++     ++ +vike+++y++eP +Lp     ++ ++ ++ ++++    + + +++++r   +gyWk tg+ +
  DCAR_002069  19 LPPGCRFFPSDQHLLSVYLTQKHAPRSsrdnSSIPDVIKEINLYDYEPFNLPDsicfRFGKGGRKRHYYCFVVARVR-DEERRRGGGAGYWKRTGRVR 115
                  79********************988776665666779**************95477755566666666666666554.4566777899********** PP

          NAM  91 evlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  +v+  ++ ++g+++ +vfy g   + g +tdW+m ey+l
  DCAR_002069 116 DVVL-GDVVIGTRRAFVFYLGdLGKGGARTDWFMYEYAL 153
                  ****.999***********983456678*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3317169IPR003441NAC domain
PROSITE profilePS5100535.1719169IPR003441NAC domain
PfamPF023657.0E-1520153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGDHLTLPSP NPNPPPSLLP PGCRFFPSDQ HLLSVYLTQK HAPRSSRDNS SIPDVIKEIN  60
LYDYEPFNLP DSICFRFGKG GRKRHYYCFV VARVRDEERR RGGGAGYWKR TGRVRDVVLG  120
DVVIGTRRAF VFYLGDLGKG GARTDWFMYE YALVEPHLAS FVLCRIFVKS RKSNTNTSER  180
PLSSCAQDSV AKVRHIGIQH DGTVDLVPSE SNMLGRNSPH RNNQVVRYPM ELVRGSDNVV  240
VGWPVDLQLG LSGHASARGM MADPLTAEQL TAILEDDFLE LNDLLSPYPG ID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2221701166NO APICAL MERISTEM PROTEIN
1ut4_B2e-2221701166NO APICAL MERISTEM PROTEIN
1ut7_A2e-2221701166NO APICAL MERISTEM PROTEIN
1ut7_B2e-2221701166NO APICAL MERISTEM PROTEIN
4dul_A2e-2221701166NAC domain-containing protein 19
4dul_B2e-2221701166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258324.10.0PREDICTED: NAC domain-containing protein 60
TrEMBLA0A162B3400.0A0A162B340_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g10250.t017e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-16NAC domain containing protein 60