PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001871
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 344aa    MW: 38970.6 Da    PI: 7.2077
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001871genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.99.8e-50301552128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  +pGfrFhPt+eelv +yL++kvegk++++ e i+++d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + + + + 
  DCAR_001871  30 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITSLDLYRFDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTDSYRP 126
                  79***************************.89***************8778899***************************************999** PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +glkktLvfy+g+apkg +++W+m+eyrl
  DCAR_001871 127 IGLKKTLVFYSGKAPKGIRSSWIMNEYRL 155
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5629176IPR003441NAC domain
PROSITE profilePS5100555.91229176IPR003441NAC domain
PfamPF023656.0E-2531155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAIASSMNQD HPHHDDDNKA DDEHDHDMVM PGFRFHPTEE ELVEFYLRRK VEGKRFNVEL  60
ITSLDLYRFD PWELPALAAI GEKEWYFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
TDSYRPIGLK KTLVFYSGKA PKGIRSSWIM NEYRLPHHET ERLQKAEISL CRVYKRPGVD  180
DHPSLPRILP TRASTSRNAN NSTPNSSKKL KNIVEQTQVH AEDKFSTDQT TKISTSTDIG  240
TALGLSSSCI ALEPNISTPN GNNIYSTVPS LVPLPNAIDD LHRLISFQQA SVNIQHGQQM  300
YHNPNNIDDV LPGGSVQSAF ADRLWEWNSV TGAAAKDYDA PFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-563117619165NO APICAL MERISTEM PROTEIN
1ut4_B5e-563117619165NO APICAL MERISTEM PROTEIN
1ut7_A5e-563117619165NO APICAL MERISTEM PROTEIN
1ut7_B5e-563117619165NO APICAL MERISTEM PROTEIN
3swm_A6e-563117622168NAC domain-containing protein 19
3swm_B6e-563117622168NAC domain-containing protein 19
3swm_C6e-563117622168NAC domain-containing protein 19
3swm_D6e-563117622168NAC domain-containing protein 19
3swp_A6e-563117622168NAC domain-containing protein 19
3swp_B6e-563117622168NAC domain-containing protein 19
3swp_C6e-563117622168NAC domain-containing protein 19
3swp_D6e-563117622168NAC domain-containing protein 19
4dul_A5e-563117619165NAC domain-containing protein 19
4dul_B5e-563117619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218019.10.0PREDICTED: NAC domain-containing protein 72
SwissprotQ9ZVP81e-111NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A166GQ560.0A0A166GQ56_DAUCS; Uncharacterized protein
STRINGcassava4.1_009166m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-113NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]