PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_001752

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 748aa MW: 85782.9 Da PI: 6.2197

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_001752	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.2	1.2e-16	566	612	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ek+i++e lsk+F p+ dAA + gv+ ++ Kr CR yGIkRW Rk DCAR_001752 566 EKTINFESLSKHFGRPLDDAAASFGVSRSTFKRLCRDYGIKRWQNRK 612 89*****************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.856	551	636	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-14	568	613	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	3.2E-18	658	737	No hit	No description
SuperFamily	SSF54277	7.57E-18	658	744	No hit	No description
SMART	SM00666	2.0E-17	659	741	IPR000270	PB1 domain
PROSITE profile	PS51745	20.954	659	741	IPR000270	PB1 domain
Pfam	PF00564	2.1E-15	660	738	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MEDNTITEDS ECVAEIEQRV PRNSLIQVWK RSLTTSGVGF YELKIDPNYP SKITGCNEQG 60 DREQLLRYTT QSAGCRISLY DEKPKGVISR VFKKNRAEIS PNISYYSADE YPQRDFALSC 120 GIRTSFCFPW YNTFGCLGLP EGVVEFVSSL DQDLETITCY CRSLEGYKFY VSSSLLFCGR 180 MNSQAFAIPE IDHLLERVFQ TFKVPVAQYW IYSDLSETFR VVHQFSSREF ENLASWWEFK 240 DVCLHMPLKK YEGLVGTRYF SHESCFFRDI TELSIDDYPF KHYAQKCGSI ASFTIRLHSP 300 YPPSKAYVLE FLFPSQGNDS YHPQTLLNSL LVEMKEHLPN FMLTSGEQLV HVSSVKVINI 360 STLENPKSFD IGQPDSSLPR HEGLLYTHTM KLFKDGTEQS SNLTSYEEAA TGETSKRTPS 420 EVPEIVHLDE SEQESDILCT EHRSFSSQHK KLKNILEHNW NAAEMDLSAM EMTLEEASKL 480 KKHAMTADRV NEQVEESPMS NKHIGRAMTT ASQPTMKLLA QHQKEFIVPD DNSKKKFILL 540 EDDTTIHVEN KTSMEAHTSE SERKSEKTIN FESLSKHFGR PLDDAAASFG VSRSTFKRLC 600 RDYGIKRWQN RKRRMDGDVS SKLTTKLKNE EPSIRNFSYS GTTPVQDTIV ARTGQELNEM 660 TVKVTYNGIN IRFKLPGSSG MAELENNVIE RLHLERKSFS IKYQDDEEDW VLIACDRDVW 720 ECMQLARSLK KSTIKLLLDL PIHHHAP*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MEDNTITEDS ECVAEIEQRV PRNSLIQVWK RSLTTSGVGF YELKIDPNYP SKITGCNEQG  60
DREQLLRYTT QSAGCRISLY DEKPKGVISR VFKKNRAEIS PNISYYSADE YPQRDFALSC  120
GIRTSFCFPW YNTFGCLGLP EGVVEFVSSL DQDLETITCY CRSLEGYKFY VSSSLLFCGR  180
MNSQAFAIPE IDHLLERVFQ TFKVPVAQYW IYSDLSETFR VVHQFSSREF ENLASWWEFK  240
DVCLHMPLKK YEGLVGTRYF SHESCFFRDI TELSIDDYPF KHYAQKCGSI ASFTIRLHSP  300
YPPSKAYVLE FLFPSQGNDS YHPQTLLNSL LVEMKEHLPN FMLTSGEQLV HVSSVKVINI  360
STLENPKSFD IGQPDSSLPR HEGLLYTHTM KLFKDGTEQS SNLTSYEEAA TGETSKRTPS  420
EVPEIVHLDE SEQESDILCT EHRSFSSQHK KLKNILEHNW NAAEMDLSAM EMTLEEASKL  480
KKHAMTADRV NEQVEESPMS NKHIGRAMTT ASQPTMKLLA QHQKEFIVPD DNSKKKFILL  540
EDDTTIHVEN KTSMEAHTSE SERKSEKTIN FESLSKHFGR PLDDAAASFG VSRSTFKRLC  600
RDYGIKRWQN RKRRMDGDVS SKLTTKLKNE EPSIRNFSYS GTTPVQDTIV ARTGQELNEM  660
TVKVTYNGIN IRFKLPGSSG MAELENNVIE RLHLERKSFS IKYQDDEEDW VLIACDRDVW  720
ECMQLARSLK KSTIKLLLDL PIHHHAP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232117.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A162AH76	0.0	A0A162AH76_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12836	2	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-30	NIN like protein 7

Link Out ? help Back to Top
Phytozome	DCAR_001752