PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001722
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 578aa    MW: 64626 Da    PI: 5.705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001722genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22127230198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                  f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F ++   +++
  DCAR_001722 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRQVLgENG 222
                  99****************************964333..4459************************************************77445999 PP

                  ..EEEEE- CS
           B3  91 elvvkvfr 98 
                  el+v+v+r
  DCAR_001722 223 ELRVGVRR 230
                  9****997 PP
2Auxin_resp111.96.2e-37256338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++rW++S+WrsLk
  DCAR_001722 256 ASHAIATGTHFSVYYKPRTSRSEFIVSLNKYLEAQSQKLSVGMRFKMRFEGEEAPERRFSGTIVGVGDGTTSRWRDSEWRSLK 338
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-41118259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-38122245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-20125230No hitNo description
PfamPF023622.6E-20127230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082127232IPR003340B3 DNA binding domain
SMARTSM010193.5E-20127232IPR003340B3 DNA binding domain
PfamPF065071.3E-34256338IPR010525Auxin response factor
PROSITE profilePS5174519.171496575IPR000270PB1 domain
PfamPF023092.2E-6500565IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-8501566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MVQDAANHPS KKARSGEASN ALFKELWHAC AGPLVTVPQE GERVYYFPQG HMEQLEASTH  60
QGSDQQLPLF NLPAKILCKV MNVQLRAEPE TDEVYAQITL LPEQDQNEVM SPDPPPPEPP  120
KYTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRQVLGE NGELRVGVRR LMRQLNNMPS  240
SVISSHSMHL GVLATASHAI ATGTHFSVYY KPRTSRSEFI VSLNKYLEAQ SQKLSVGMRF  300
KMRFEGEEAP ERRFSGTIVG VGDGTTSRWR DSEWRSLKVQ WDEPSSVLRP DTVSPWELEP  360
LVAATTPNSQ PPQRNKRARP PVLPTQTTDI PTLGLWKAPA DRPSAVGYCD PSRGQDLFSS  420
PKFSSGAIES ISPVVSKGTV EKRPGNGYRL FGIDLVDPST VEDTPMIVSG AVVDDLSLTL  480
QVESDLHSEP YDADQSDLPS VHMQGIAVGR AVDLTRFNKY EDLLRKLEDM FEIEGELCGS  540
EKKWQVVYTD DEDDIMMVGD DPWQLSFVIL FFFHTKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053613355Auxin response factor 1
4ldw_A0.053613355Auxin response factor 1
4ldw_B0.053613355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224727.10.0PREDICTED: auxin response factor 1-like isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A162AH500.0A0A162AH50_DAUCS; Auxin response factor
STRINGXP_009355376.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]