PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001687
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 283aa    MW: 31859.1 Da    PI: 6.4239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001687genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.4e-112162561055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++ +L+ l+P+      +K++ +++Le AveY+k Lq
  DCAR_001687 216 RKRRERINERLRTLQNLVPNG-----TKVDISTMLEDAVEYVKFLQ 256
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.396206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-15209270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13211269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-12212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-12215260No hitNo description
PfamPF000101.9E-8216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESYESILGS EWSALNAMHS TEESDFMAQL LNYCSIPNDL HNSGSQNTDV HHFPGGTNFY  60
HLTSDHGSCY AGNFDHILAT YDDFILCNEE VIEENKSRVQ LEQEDQVPES ESNKDAVFRN  120
PLQKSKKRTT NSREVQKNKR NVKAKKKQKH TKTSCTNKEQ NGSSSCSSEN DSIASHELNG  180
VALNSSESKE ARTINSNGQP RAVRGSATDP QSLYARKRRE RINERLRTLQ NLVPNGTKVD  240
ISTMLEDAVE YVKFLQLQIQ LLSSDDKWMY APIAYNGTDV RT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248792.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A166GJI70.0A0A166GJI7_DAUCS; Uncharacterized protein
STRINGPOPTR_0001s30150.11e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.14e-32root hair defective 6-like 4