PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001474
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23477.3 Da    PI: 8.0659
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001474genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF786.8e-25956148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gkly+
  DCAR_001474  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYD 56
                 79********************************************97 PP
2K-box57.36.9e-2086175998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++e++ +  + e++ Lk ei+ Lq+ +  + G + +++++ eL+ Le++L+  + +iRs K+++++++i+ l++ke+ l+ +n++L+ k+
  DCAR_001474  86 ATEKQVQDTKMEIDVLKTEIDLLQKGLGYMSGGGTGKMTMDELHMLEKNLQVWIDHIRSVKMDIMFQEIQLLKNKEEILRAANHYLSDKM 175
                  678999********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.32E-26173IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.17161IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-26323IPR002100Transcription factor, MADS-box
CDDcd002656.85E-38376No hitNo description
PfamPF003192.4E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1987175IPR002487Transcription factor, K-box
PROSITE profilePS5129710.63291181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVRGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYDLATK  60
GTMQGLVNKY LKSTRGADPD VEDCQATEKQ VQDTKMEIDV LKTEIDLLQK GLGYMSGGGT  120
GKMTMDELHM LEKNLQVWID HIRSVKMDIM FQEIQLLKNK EEILRAANHY LSDKMSNQYG  180
FINIDTPVMD NIAYPLTIQN EIYQF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218759.11e-152PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388412e-75AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A166GCU71e-151A0A166GCU7_DAUCS; Uncharacterized protein
STRINGXP_009770171.12e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-78AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]