PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_001392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 31091.9 Da PI: 6.4058 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a++ a+++++g DCAR_001392 111 KYRGVRRRP-WGKWAAEIRDPY----KaARVWLGTFTTAEEAARAYDVAALRFRG 160 8********.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 110 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-37 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 26.055 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-23 | 111 | 169 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-12 | 112 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.46E-28 | 119 | 170 | No hit | No description |
PRINTS | PR00367 | 8.2E-12 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDRSGTRQGD REHLEPVLMG TRFGGQREDE MSVMVSALTH VVAGGGSDGG FGQKRHRDEG 60 GDHRDPVPAG FLPYQDPSQE GSPTYVHDSS SNDTNNSQEP SSGEEIQARR KYRGVRRRPW 120 GKWAAEIRDP YKAARVWLGT FTTAEEAARA YDVAALRFRG SKAKLNFPEN VTRRPSSSSQ 180 APQWIISSSP DTSFTVSTMP EPVVQNAQNV YPVQGAGEYM DYYSQQSTSL LDQFAFSSAG 240 TSAPTLHSSS SSSTSDYTST IGMPNYYPPN FPDFDPGHNR RF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 110 | 172 | 4 | 67 | ATERF1 |
3gcc_A | 4e-22 | 110 | 172 | 4 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221001.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A162AF54 | 0.0 | A0A162AF54_DAUCS; Uncharacterized protein | ||||
STRING | XP_004160502.1 | 3e-43 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_001392 |