PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001346
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 679aa    MW: 76346.3 Da    PI: 4.4944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001346genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61.1e-4861331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd+el+ +yLk++v gkk  + ++++e++iy++ PwdLp k  +k+++ +wyfF++r+ ky+tg r+nratk+g+Wkatgkd+ v+  k
  DCAR_001346   6 LPPGFRFHPTDDELMRYYLKRQVMGKKSAF-DAVTELNIYQYSPWDLPdKcLLKSRDLKWYFFCPREPKYTTGARANRATKTGFWKATGKDRCVTY-K 101
                  79*************************777.99***************6445566777**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++g+ ktL+f+kg+apkge+tdWvmheyrl
  DCAR_001346 102 QRTIGMIKTLIFHKGHAPKGERTDWVMHEYRL 133
                  999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-563154IPR003441NAC domain
PROSITE profilePS5100554.5076154IPR003441NAC domain
PfamPF023653.6E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MARMFLPPGF RFHPTDDELM RYYLKRQVMG KKSAFDAVTE LNIYQYSPWD LPDKCLLKSR  60
DLKWYFFCPR EPKYTTGARA NRATKTGFWK ATGKDRCVTY KQRTIGMIKT LIFHKGHAPK  120
GERTDWVMHE YRLKDEELVD VVQDAYVLCR IFQKKGLGPQ NGAQYGAPFN EDEWNDIEEE  180
SQTFVNNVPQ SSILNSDAIN LPVPVNSLVS YVPEPDPLSE GPQNIDMQPI MKEVCVVSSA  240
VESHMLPNYV PPGIIGSSAA THMIPGNSNM WSTSGPSAPG PLDTGMPILL NPDSDVLASL  300
DMFTEDINML PVERKEKSDL SGQLPQLHEN DIYDIIGDLD DWIELGDTGL NISSYHDADY  360
DLNPVLMGEE APFLELNDLR TPIRCPPEDV DVDRMWTDRG YTAPTHDMSI GLDKCYSEGA  420
NGLNISSYHD ADYNLNPVLM GEEAPFLELN DLRTPIRCPP EAVDLDWMWT NRGYTAPTHD  480
MSIGLDKYYS EGANICSVEK VSGWNENAPL LGSQLGNNSE NLWKDNCIGN FEARGFDAVM  540
GNEGPSSTME PEDNCTEKQI QRRGKLLRVL QYSLESLYAH MITVEQLIDI FPHSGSSIHL  600
KAEVTLMVDE CTKDALLHNM EESACILISW GNQPILDANG SSIHFKAEVT PMFVYVLLRY  660
CYGAAKRKSF QLVLTVEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47215511169Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0127060.0AB012706.1 Daucus carota mRNA for 179a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229460.10.0PREDICTED: uncharacterized protein LOC108204501 isoform X1
TrEMBLA0A166G9310.0A0A166G931_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-77NAC domain containing protein 103