PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_001338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 19051.8 Da PI: 8.502 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.9 | 3.6e-43 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrrkCa++ Cv+ap+fp ++p+kfanvhk+FGasnv k+l+++pe++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+++la + DCAR_001338 24 PCAACKLLRRKCAAGdCVFAPHFPPDDPSKFANVHKVFGASNVNKMLQEVPEHQRGDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDTLQTQLAIA 121 7***********9866********************************************************************************99 PP DUF260 98 kee 100 +++ DCAR_001338 122 QAQ 124 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.763 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-43 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKLNGRKQSG AAAGGLSAAA QVSPCAACKL LRRKCAAGDC VFAPHFPPDD PSKFANVHKV 60 FGASNVNKML QEVPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISCLQQQ IDTLQTQLAI 120 AQAQVLHLRV HVAATAGQAL CASTCGSPMT SKITMSNQTK PNSNMSMVVD QGSLGDFTWS 180 C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-49 | 23 | 126 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-49 | 23 | 126 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017230822.1 | 1e-133 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-62 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A162B015 | 1e-131 | A0A162B015_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.010G170700.1 | 2e-74 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-56 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_001338 |