PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001280
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 288aa    MW: 32624.1 Da    PI: 8.3858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001280genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-112052841498
                  T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +++p kf ++  ++ ++e  tl++++   +sW+v l  +k+ +r+ l +GW+   k+ +L +gD++vF   g s+ ++++ v++
  DCAR_001280 205 FGVTVPVKFKAATkNLGEAE--TLKIRH-GQKSWNVVL--KKRTNRVELHSGWSLLWKDLDLMTGDICVFNNAG-SKLKFNLEVYK 284
                  45688888843332333333..566554.55*******..*******************************555.66666776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-10189275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-12189285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-6190284No hitNo description
SMARTSM010190.0029191286IPR003340B3 DNA binding domain
PROSITE profilePS508639.291192286IPR003340B3 DNA binding domain
PfamPF023625.6E-9206283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDSDLKIPIM FLKALIFFPR GTLPDKLRLP RGFVDLFGES LPEMLNLKTM EGFNFAVKYS  60
KEDGCFSDMH GLLAKLLPKE CQFFLFKHLG GANFEVFILD VGCVLQGRNN SFECMFIRIF  120
GKSSSEWSPL KLSEDVIDKF GSQVPSGIRF YDVSICDILV FTYTGGDLFV VHAFGKDCMP  180
KRSCKDAGLY FEVEIKQSHL QDYDFGVTVP VKFKAATKNL GEAETLKIRH GQKSWNVVLK  240
KRTNRVELHS GWSLLWKDLD LMTGDICVFN NAGSKLKFNL EVYKKSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225236.19e-99PREDICTED: uncharacterized protein LOC108201467
TrEMBLA0A166FV390.0A0A166FV39_DAUCS; Uncharacterized protein