PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001264
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 262aa    MW: 29836.6 Da    PI: 6.7386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001264genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-101454148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++  G  +W++        R++k+c++rw++yl
      DCAR_001264 14 RGLWSPEEDEKLIKHITAKGHSCWSL-------QRCGKSCRLRWLNYL 54
                     788***********************.......7999*********97 PP
2Myb_DNA-binding47.25.2e-1560103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+  +++a+  lG++ W+ Ia++++ gRt++++k++w++
      DCAR_001264  60 KGPFTEHEEWTIIQAHGILGNK-WAQIAKHLP-GRTDNEIKNFWNS 103
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.782954IPR017930Myb domain
SuperFamilySSF466891.27E-2312101IPR009057Homeodomain-like
SMARTSM007174.7E-61356IPR001005SANT/Myb domain
PfamPF002491.2E-81454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-161561IPR009057Homeodomain-like
CDDcd001674.64E-71754No hitNo description
PROSITE profilePS5129424.26655109IPR017930Myb domain
SMARTSM007176.8E-1359107IPR001005SANT/Myb domain
PfamPF002493.0E-1360103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2562110IPR009057Homeodomain-like
CDDcd001674.55E-962102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVVHHCCSKQ QVKRGLWSPE EDEKLIKHIT AKGHSCWSLQ RCGKSCRLRW LNYLRPDLRK  60
GPFTEHEEWT IIQAHGILGN KWAQIAKHLP GRTDNEIKNF WNSCIKKKLI AHGLDPKAHN  120
LLSVHPNHSK GNNIDNACMA TTDFSVDTSK TSAYEENTTR TALECRIHHS LWSNSQSCES  180
LLGFTTEPSL KYLPVSSEPS TLQQELRLHS QPEDFDGEFT DNFDELMSVV NQGMNDQSFE  240
GINFDMQFIE TALNCAVWNN V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141097108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244801.10.0PREDICTED: transcription factor MYB57-like
TrEMBLA0A166FUQ10.0A0A166FUQ1_DAUCS; Uncharacterized protein
STRINGSb02g033830.11e-71(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-66myb domain protein 67