PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001150
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 390aa    MW: 42043 Da    PI: 7.9996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001150genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-20193242255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  DCAR_001150 193 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFQTAEAAARAYDEAALRFRG 242
                  8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-33192251IPR001471AP2/ERF domain
CDDcd000184.48E-22193252No hitNo description
SuperFamilySSF541712.22E-22193251IPR016177DNA-binding domain
SMARTSM003801.1E-37193256IPR001471AP2/ERF domain
PROSITE profilePS5103225.462193250IPR001471AP2/ERF domain
PfamPF008472.3E-13193242IPR001471AP2/ERF domain
PRINTSPR003671.9E-11194205IPR001471AP2/ERF domain
PRINTSPR003671.9E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVIKKVASSG QQSGDQARFP GRETSNEGGG GAPPSATGAM DMFSQAREMS AMVTALTHVV  60
SGQSSRNLND SNYYTLPQDQ FSGGMVRFGG GSDGSWMYTS NSPSSSAYSS SSSGSLTGQK  120
RGREEDTGVM QSLQQQQRQQ FHLANYGGGS GDSRSTESSV PKLPLSVSEE DTSIAATSSV  180
PSEPPKETGE ARKYRGVRQR PWGKWAAEIR DPHKAARVWL GTFQTAEAAA RAYDEAALRF  240
RGSRAKLNFP EQVGLARPPQ LPPLVSAPQA TIFSAPPPAQ LDQTQQFQGP DSAASDYWRY  300
SQLLQNSADF HLQHQHYSLN QMLSASTMAS VQTHSLGSSS STLAPSLPYH QQDQQSIFMW  360
PPGNRYRDGS SDFHHPPWTG PANFPPSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23190253266ATERF1
3gcc_A1e-23190253266ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310928e-38KT031092.1 Glycine max clone HN_CCL_185 AP2-EREBP transcription factor (Glyma16g27950.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229979.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A166G7560.0A0A166G756_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-28related to AP2 6