PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000915

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 184aa MW: 19248.7 Da PI: 6.5348

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000915	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101	2e-31	20	128	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 + ++ hTkv+gR+ R+R++ +ca r+F+L++eLG+ +d++ti+WLlqqa+pai+ +tgt++ +a ++ + s + + ++g DCAR_000915 20 PAPRKDLHTKVEGRGSRIRMPTLCATRVFQLTKELGLATDGETIQWLLQQAEPAIIRATGTGTVPAIATvtA--DGSLRVPETKEGaaedvsktsgla 115 56789********************************************************99999666332..333333322222223333344444 PP TCP 89 ............k 89 DCAR_000915 116 pvgpspvsvpgfG 128 4555555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.5E-25	23	93	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.775	23	77	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSSQKDFKGD SQVSGGPSQP APRKDLHTKV EGRGSRIRMP TLCATRVFQL TKELGLATDG 60 ETIQWLLQQA EPAIIRATGT GTVPAIATVT ADGSLRVPET KEGAAEDVSK TSGLAPVGPS 120 PVSVPGFGMA AENGMRMGVP HGAEPNQNQT SVSCEARVSS DAEEEYDEVV LMGKKIRFRK 180 GGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245482.1	1e-132	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	1e-32	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A166FZI6	1e-130	A0A166FZI6_DAUCS; Uncharacterized protein
STRING	XP_009780060.1	6e-32	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	9e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000915